T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 46786..71938
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCD41_RS23140 (LCD41_23195) | 46786..49014 | - | 2229 | WP_106105154 | type IV conjugative transfer system coupling protein TraD | virb4 |
| LCD41_RS23145 (LCD41_23200) | 49148..49822 | - | 675 | WP_008324909 | tetratricopeptide repeat protein | - |
| LCD41_RS23150 (LCD41_23205) | 49897..50328 | - | 432 | WP_008324118 | entry exclusion protein | - |
| LCD41_RS23155 (LCD41_23210) | 50350..53172 | - | 2823 | WP_008324119 | conjugal transfer mating-pair stabilization protein TraG | traG |
| LCD41_RS23160 (LCD41_23215) | 53172..54542 | - | 1371 | WP_008324121 | conjugal transfer pilus assembly protein TraH | traH |
| LCD41_RS23165 (LCD41_23220) | 54529..54957 | - | 429 | WP_008324122 | hypothetical protein | - |
| LCD41_RS23170 (LCD41_23225) | 54950..55504 | - | 555 | WP_008324125 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | traF |
| LCD41_RS23175 (LCD41_23230) | 55494..55742 | - | 249 | WP_008324126 | type-F conjugative transfer system pilin chaperone TraQ | - |
| LCD41_RS23180 (LCD41_23235) | 55759..56508 | - | 750 | WP_008324127 | type-F conjugative transfer system pilin assembly protein TraF | traF |
| LCD41_RS23185 (LCD41_23240) | 56539..56727 | - | 189 | WP_008324128 | conjugal transfer protein TrbE | - |
| LCD41_RS23190 (LCD41_23245) | 56759..58612 | - | 1854 | WP_022652255 | type-F conjugative transfer system mating-pair stabilization protein TraN | traN |
| LCD41_RS23195 (LCD41_23250) | 58609..59238 | - | 630 | WP_008324130 | type-F conjugative transfer system pilin assembly protein TrbC | trbC |
| LCD41_RS23200 (LCD41_23255) | 59255..60241 | - | 987 | WP_032160671 | conjugal transfer pilus assembly protein TraU | traU |
| LCD41_RS23205 (LCD41_23260) | 60244..60891 | - | 648 | WP_008324132 | type-F conjugative transfer system protein TraW | traW |
| LCD41_RS23210 (LCD41_23265) | 60891..61238 | - | 348 | WP_008324133 | type-F conjugative transfer system protein TrbI | - |
| LCD41_RS23215 (LCD41_23270) | 61235..63865 | - | 2631 | WP_008324134 | type IV secretion system protein TraC | virb4 |
| LCD41_RS23220 (LCD41_23275) | 63858..64424 | - | 567 | WP_008324135 | conjugal transfer pilus-stabilizing protein TraP | - |
| LCD41_RS23225 (LCD41_23280) | 64414..64815 | - | 402 | WP_008324137 | hypothetical protein | - |
| LCD41_RS23230 (LCD41_23285) | 64799..64984 | - | 186 | WP_008324139 | hypothetical protein | - |
| LCD41_RS23235 (LCD41_23290) | 64988..65212 | - | 225 | WP_008324141 | TraR/DksA C4-type zinc finger protein | - |
| LCD41_RS23240 (LCD41_23295) | 65332..65871 | - | 540 | WP_008324154 | type IV conjugative transfer system lipoprotein TraV | traV |
| LCD41_RS23245 (LCD41_23300) | 65893..67287 | - | 1395 | WP_008324156 | F-type conjugal transfer pilus assembly protein TraB | traB |
| LCD41_RS23250 (LCD41_23305) | 67274..68017 | - | 744 | WP_008324157 | type-F conjugative transfer system secretin TraK | traK |
| LCD41_RS23255 (LCD41_23310) | 68004..68570 | - | 567 | WP_008324158 | type IV conjugative transfer system protein TraE | traE |
| LCD41_RS23260 (LCD41_23315) | 68585..68890 | - | 306 | WP_008324160 | type IV conjugative transfer system protein TraL | traL |
| LCD41_RS23265 (LCD41_23320) | 69041..69391 | - | 351 | WP_008324162 | type IV conjugative transfer system pilin TraA | - |
| LCD41_RS23270 (LCD41_23325) | 69449..69673 | - | 225 | WP_008324165 | TraY domain-containing protein | - |
| LCD41_RS23275 (LCD41_23330) | 69760..70449 | - | 690 | WP_008324166 | hypothetical protein | - |
| LCD41_RS23280 (LCD41_23335) | 70638..71030 | - | 393 | WP_008324167 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LCD41_RS23285 (LCD41_23340) | 71462..71938 | + | 477 | WP_008324168 | transglycosylase SLT domain-containing protein | virB1 |
| LCD41_RS23290 (LCD41_23345) | 71985..72515 | - | 531 | WP_008324170 | antirestriction protein | - |
| LCD41_RS23295 (LCD41_23350) | 73142..73972 | - | 831 | WP_008324171 | N-6 DNA methylase | - |
| LCD41_RS23300 (LCD41_23355) | 74015..74278 | - | 264 | WP_008324174 | hypothetical protein | - |
| LCD41_RS23305 (LCD41_23360) | 74364..74708 | - | 345 | WP_008324177 | hypothetical protein | - |
| LCD41_RS23310 (LCD41_23365) | 74755..75042 | - | 288 | WP_008324178 | hypothetical protein | - |
| LCD41_RS23315 (LCD41_23370) | 75096..75470 | - | 375 | WP_008324180 | hypothetical protein | - |
| LCD41_RS23320 (LCD41_23375) | 76097..76456 | - | 360 | WP_047353151 | hypothetical protein | - |
| LCD41_RS23325 (LCD41_23380) | 76518..76841 | - | 324 | WP_047353152 | hypothetical protein | - |