T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 15518..40318
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCD48_RS26125 (LCD48_26135) | 15518..17749 | - | 2232 | WP_058654345 | type IV conjugative transfer system coupling protein TraD | virb4 |
| LCD48_RS26130 (LCD48_26140) | 17868..18608 | - | 741 | WP_047363684 | hypothetical protein | - |
| LCD48_RS26135 (LCD48_26145) | 18649..19122 | - | 474 | WP_032637302 | hypothetical protein | - |
| LCD48_RS26140 (LCD48_26150) | 19147..21966 | - | 2820 | WP_032637300 | conjugal transfer mating-pair stabilization protein TraG | traG |
| LCD48_RS26145 (LCD48_26155) | 21966..23342 | - | 1377 | WP_086538482 | conjugal transfer pilus assembly protein TraH | traH |
| LCD48_RS26150 (LCD48_26160) | 23339..23884 | - | 546 | WP_032637295 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | traF |
| LCD48_RS26155 (LCD48_26165) | 23874..24122 | - | 249 | WP_011901838 | type-F conjugative transfer system pilin chaperone TraQ | - |
| LCD48_RS26160 (LCD48_26170) | 24139..24888 | - | 750 | WP_032637292 | type-F conjugative transfer system pilin assembly protein TraF | traF |
| LCD48_RS26165 (LCD48_26175) | 24919..25107 | - | 189 | WP_008324128 | conjugal transfer protein TrbE | - |
| LCD48_RS26170 (LCD48_26180) | 25139..26992 | - | 1854 | WP_032637290 | type-F conjugative transfer system mating-pair stabilization protein TraN | traN |
| LCD48_RS26175 (LCD48_26185) | 26989..27618 | - | 630 | WP_032637288 | type-F conjugative transfer system pilin assembly protein TrbC | trbC |
| LCD48_RS26180 (LCD48_26190) | 27635..28621 | - | 987 | WP_200927139 | conjugal transfer pilus assembly protein TraU | traU |
| LCD48_RS26185 (LCD48_26195) | 28624..29271 | - | 648 | WP_200927127 | type-F conjugative transfer system protein TraW | traW |
| LCD48_RS26190 (LCD48_26200) | 29271..29618 | - | 348 | WP_008324133 | type-F conjugative transfer system protein TrbI | - |
| LCD48_RS26195 (LCD48_26205) | 29615..32245 | - | 2631 | WP_008324134 | type IV secretion system protein TraC | virb4 |
| LCD48_RS26200 (LCD48_26210) | 32238..32804 | - | 567 | WP_008324135 | conjugal transfer pilus-stabilizing protein TraP | - |
| LCD48_RS26205 (LCD48_26215) | 32794..33195 | - | 402 | WP_008324137 | hypothetical protein | - |
| LCD48_RS26210 (LCD48_26220) | 33179..33364 | - | 186 | WP_022652254 | hypothetical protein | - |
| LCD48_RS26215 (LCD48_26225) | 33368..33592 | - | 225 | WP_008324141 | TraR/DksA C4-type zinc finger protein | - |
| LCD48_RS26220 (LCD48_26230) | 33712..34251 | - | 540 | WP_008324154 | type IV conjugative transfer system lipoprotein TraV | traV |
| LCD48_RS26225 (LCD48_26235) | 34273..35667 | - | 1395 | WP_008324156 | F-type conjugal transfer pilus assembly protein TraB | traB |
| LCD48_RS26230 (LCD48_26240) | 35654..36397 | - | 744 | WP_008324157 | type-F conjugative transfer system secretin TraK | traK |
| LCD48_RS26235 (LCD48_26245) | 36384..36950 | - | 567 | WP_008324158 | type IV conjugative transfer system protein TraE | traE |
| LCD48_RS26240 (LCD48_26250) | 36965..37270 | - | 306 | WP_008324160 | type IV conjugative transfer system protein TraL | traL |
| LCD48_RS26245 (LCD48_26255) | 37421..37771 | - | 351 | WP_008324162 | type IV conjugative transfer system pilin TraA | - |
| LCD48_RS26250 (LCD48_26260) | 37829..38053 | - | 225 | WP_008324165 | TraY domain-containing protein | - |
| LCD48_RS26255 (LCD48_26265) | 38140..38829 | - | 690 | WP_008324166 | hypothetical protein | - |
| LCD48_RS26260 (LCD48_26270) | 39018..39410 | - | 393 | WP_008324167 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LCD48_RS26265 (LCD48_26275) | 39842..40318 | + | 477 | WP_032637277 | transglycosylase SLT domain-containing protein | virB1 |
| LCD48_RS26270 (LCD48_26280) | 40367..40897 | - | 531 | WP_032637275 | antirestriction protein | - |
| LCD48_RS26275 (LCD48_26285) | 41524..42354 | - | 831 | WP_032637274 | N-6 DNA methylase | - |
| LCD48_RS26280 (LCD48_26290) | 42397..42660 | - | 264 | WP_032637261 | hypothetical protein | - |
| LCD48_RS26285 (LCD48_26295) | 42746..43090 | - | 345 | WP_032637258 | hypothetical protein | - |
| LCD48_RS26290 (LCD48_26300) | 43137..43427 | - | 291 | WP_230202657 | hypothetical protein | - |
| LCD48_RS26295 (LCD48_26305) | 43478..43852 | - | 375 | WP_032637252 | hypothetical protein | - |
| LCD48_RS26300 (LCD48_26310) | 44499..44873 | - | 375 | WP_032637367 | hypothetical protein | - |
| LCD48_RS26305 (LCD48_26315) | 44935..45258 | - | 324 | WP_057069613 | hypothetical protein | - |