T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 102122..129575
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCD39_RS22880 (LCD39_22920) | 102122..104296 | - | 2175 | WP_148868889 | type IV conjugative transfer system coupling protein TraD | virb4 |
| LCD39_RS22885 (LCD39_22925) | 104430..104888 | - | 459 | WP_246948313 | tetratricopeptide repeat protein | - |
| LCD39_RS22890 (LCD39_22930) | 104942..105922 | + | 981 | WP_197228368 | IS5-like element ISKpn26 family transposase | - |
| LCD39_RS22895 (LCD39_22935) | 106174..107205 | + | 1032 | WP_001395480 | IS630-like element ISEc33 family transposase | - |
| LCD39_RS22900 (LCD39_22940) | 107534..107965 | - | 432 | WP_008324118 | entry exclusion protein | - |
| LCD39_RS22905 (LCD39_22945) | 107987..110809 | - | 2823 | WP_246948322 | conjugal transfer mating-pair stabilization protein TraG | traG |
| LCD39_RS22910 (LCD39_22950) | 110809..112179 | - | 1371 | WP_016247527 | conjugal transfer pilus assembly protein TraH | traH |
| LCD39_RS22915 (LCD39_22955) | 112166..112594 | - | 429 | WP_008324122 | hypothetical protein | - |
| LCD39_RS22920 (LCD39_22960) | 112587..113141 | - | 555 | WP_008324125 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | traF |
| LCD39_RS22925 (LCD39_22965) | 113131..113379 | - | 249 | WP_008324126 | type-F conjugative transfer system pilin chaperone TraQ | - |
| LCD39_RS22930 (LCD39_22970) | 113396..114145 | - | 750 | WP_008324127 | type-F conjugative transfer system pilin assembly protein TraF | traF |
| LCD39_RS22935 (LCD39_22975) | 114176..114364 | - | 189 | WP_008324128 | conjugal transfer protein TrbE | - |
| LCD39_RS22940 (LCD39_22980) | 114396..116249 | - | 1854 | WP_022652255 | type-F conjugative transfer system mating-pair stabilization protein TraN | traN |
| LCD39_RS22945 (LCD39_22985) | 116246..116875 | - | 630 | WP_008324130 | type-F conjugative transfer system pilin assembly protein TrbC | trbC |
| LCD39_RS22950 (LCD39_22990) | 116892..117878 | - | 987 | WP_032160671 | conjugal transfer pilus assembly protein TraU | traU |
| LCD39_RS22955 (LCD39_22995) | 117881..118528 | - | 648 | WP_008324132 | type-F conjugative transfer system protein TraW | traW |
| LCD39_RS22960 (LCD39_23000) | 118528..118875 | - | 348 | WP_008324133 | type-F conjugative transfer system protein TrbI | - |
| LCD39_RS22965 (LCD39_23005) | 118872..121502 | - | 2631 | WP_008324134 | type IV secretion system protein TraC | virb4 |
| LCD39_RS22970 (LCD39_23010) | 121495..122061 | - | 567 | WP_008324135 | conjugal transfer pilus-stabilizing protein TraP | - |
| LCD39_RS22975 (LCD39_23015) | 122051..122452 | - | 402 | WP_008324137 | hypothetical protein | - |
| LCD39_RS22980 (LCD39_23020) | 122436..122621 | - | 186 | WP_008324139 | hypothetical protein | - |
| LCD39_RS22985 (LCD39_23025) | 122625..122849 | - | 225 | WP_008324141 | TraR/DksA C4-type zinc finger protein | - |
| LCD39_RS22990 (LCD39_23030) | 122969..123508 | - | 540 | WP_008324154 | type IV conjugative transfer system lipoprotein TraV | traV |
| LCD39_RS22995 (LCD39_23035) | 123530..124924 | - | 1395 | WP_008324156 | F-type conjugal transfer pilus assembly protein TraB | traB |
| LCD39_RS23000 (LCD39_23040) | 124911..125654 | - | 744 | WP_008324157 | type-F conjugative transfer system secretin TraK | traK |
| LCD39_RS23005 (LCD39_23045) | 125641..126207 | - | 567 | WP_008324158 | type IV conjugative transfer system protein TraE | traE |
| LCD39_RS23010 (LCD39_23050) | 126222..126527 | - | 306 | WP_008324160 | type IV conjugative transfer system protein TraL | traL |
| LCD39_RS23015 (LCD39_23055) | 126678..127028 | - | 351 | WP_008324162 | type IV conjugative transfer system pilin TraA | - |
| LCD39_RS23020 (LCD39_23060) | 127086..127310 | - | 225 | WP_008324165 | TraY domain-containing protein | - |
| LCD39_RS23025 (LCD39_23065) | 127397..128086 | - | 690 | WP_008324166 | hypothetical protein | - |
| LCD39_RS23030 (LCD39_23070) | 128275..128667 | - | 393 | WP_008324167 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LCD39_RS23035 (LCD39_23075) | 129099..129575 | + | 477 | WP_008324168 | transglycosylase SLT domain-containing protein | virB1 |
| LCD39_RS23040 (LCD39_23080) | 129622..130152 | - | 531 | WP_008324170 | antirestriction protein | - |
| LCD39_RS23045 (LCD39_23085) | 130779..131609 | - | 831 | WP_008324171 | N-6 DNA methylase | - |
| LCD39_RS23050 (LCD39_23090) | 131652..131915 | - | 264 | WP_008324174 | hypothetical protein | - |
| LCD39_RS23055 (LCD39_23095) | 132001..132345 | - | 345 | WP_008324177 | hypothetical protein | - |
| LCD39_RS23060 (LCD39_23100) | 132392..132679 | - | 288 | WP_008324178 | hypothetical protein | - |
| LCD39_RS23065 (LCD39_23105) | 132733..133107 | - | 375 | WP_008324180 | hypothetical protein | - |
| LCD39_RS23070 (LCD39_23110) | 133734..134093 | - | 360 | WP_008324181 | hypothetical protein | - |
| LCD39_RS23075 (LCD39_23115) | 134155..134478 | - | 324 | WP_008324183 | hypothetical protein | - |