T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 71387..95213
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNN29_RS24425 (LNN29_24375) | 69103..71394 | - | 2292 | WP_001289276 | F-type conjugative transfer protein TrbC | - |
| LNN29_RS24430 (LNN29_24380) | 71387..72457 | - | 1071 | WP_000151576 | IncI1-type conjugal transfer protein TrbB | trbB |
| LNN29_RS24435 (LNN29_24385) | 72476..73684 | - | 1209 | WP_000121273 | IncI1-type conjugal transfer protein TrbA | trbA |
| LNN29_RS24440 (LNN29_24390) | 73976..74128 | + | 153 | WP_001303307 | Hok/Gef family protein | - |
| LNN29_RS24445 (LNN29_24395) | 74200..74451 | - | 252 | WP_001291965 | hypothetical protein | - |
| LNN29_RS25270 | 74951..75046 | + | 96 | WP_001303310 | DinQ-like type I toxin DqlB | - |
| LNN29_RS24455 (LNN29_24405) | 75111..75248 | - | 138 | WP_047088497 | hypothetical protein | - |
| LNN29_RS24460 (LNN29_24410) | 75293..76519 | - | 1227 | WP_024186316 | RNA-guided endonuclease TnpB family protein | - |
| LNN29_RS24465 (LNN29_24415) | 76578..76982 | + | 405 | WP_001175009 | IS200/IS605 family transposase | - |
| LNN29_RS24470 (LNN29_24420) | 77314..77523 | - | 210 | WP_032178830 | hemolysin expression modulator Hha | - |
| LNN29_RS24475 (LNN29_24425) | 77621..78283 | - | 663 | WP_000644794 | plasmid IncI1-type surface exclusion protein ExcA | - |
| LNN29_RS24480 (LNN29_24430) | 78354..80522 | - | 2169 | WP_000698368 | DotA/TraY family protein | traY |
| LNN29_RS24485 (LNN29_24435) | 80619..81203 | - | 585 | WP_001037985 | IncI1-type conjugal transfer protein TraX | - |
| LNN29_RS24490 (LNN29_24440) | 81232..82434 | - | 1203 | WP_001189156 | IncI1-type conjugal transfer protein TraW | traW |
| LNN29_RS24495 (LNN29_24445) | 82401..83015 | - | 615 | WP_000337400 | IncI1-type conjugal transfer protein TraV | traV |
| LNN29_RS24500 (LNN29_24450) | 83015..86059 | - | 3045 | WP_229321789 | IncI1-type conjugal transfer protein TraU | traU |
| LNN29_RS24505 (LNN29_24455) | 86116..87654 | - | 1539 | WP_001547431 | IS66-like element ISEc8 family transposase | - |
| LNN29_RS24510 (LNN29_24460) | 87704..88051 | - | 348 | WP_000612591 | IS66 family insertion sequence element accessory protein TnpB | - |
| LNN29_RS24515 (LNN29_24465) | 88048..88428 | - | 381 | WP_072157534 | transposase | - |
| LNN29_RS24520 (LNN29_24470) | 88521..89336 | - | 816 | Protein_101 | IS4 family transposase | - |
| LNN29_RS24525 (LNN29_24475) | 89375..90100 | + | 726 | WP_104920585 | conjugal transfer complement resistance protein TraT | - |
| LNN29_RS24530 (LNN29_24480) | 90282..90959 | + | 678 | WP_001682408 | IS66-like element accessory protein TnpA | - |
| LNN29_RS24535 (LNN29_24485) | 90959..91306 | + | 348 | WP_000624622 | IS66 family insertion sequence element accessory protein TnpB | - |
| LNN29_RS24540 (LNN29_24490) | 91326..92897 | + | 1572 | WP_000381395 | IS66-like element ISCro1 family transposase | - |
| LNN29_RS24545 (LNN29_24495) | 93060..95213 | + | 2154 | WP_104920584 | type IV conjugative transfer system coupling protein TraD | virb4 |
| LNN29_RS24550 (LNN29_24500) | 95213..99826 | + | 4614 | WP_104920583 | conjugative transfer relaxase/helicase TraI | - |
| LNN29_RS24555 (LNN29_24505) | 99860..100105 | + | 246 | Protein_108 | thermonuclease family protein | - |