T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 38912..48002
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXC46_RS00275 (pYT3_0270) | 34943..35176 | - | 234 | WP_001191890 | hypothetical protein | - |
| HXC46_RS00280 (pYT3_0275) | 35158..35775 | - | 618 | WP_001249395 | hypothetical protein | - |
| HXC46_RS00285 (pYT3_0280) | 35943..38915 | + | 2973 | WP_001326173 | MobH family relaxase | - |
| HXC46_RS00290 (pYT3_0285) | 38912..40777 | + | 1866 | WP_000178857 | conjugative transfer system coupling protein TraD | virb4 |
| HXC46_RS00295 (pYT3_0290) | 40788..41372 | + | 585 | WP_000332868 | hypothetical protein | - |
| HXC46_RS00300 (pYT3_0295) | 41329..41958 | + | 630 | WP_000743449 | DUF4400 domain-containing protein | tfc7 |
| HXC46_RS00305 (pYT3_0300) | 41968..42414 | + | 447 | WP_000122507 | hypothetical protein | - |
| HXC46_RS00310 (pYT3_0305) | 42424..42801 | + | 378 | WP_000869297 | hypothetical protein | - |
| HXC46_RS00315 (pYT3_0310) | 42801..43463 | + | 663 | WP_001231464 | hypothetical protein | - |
| HXC46_RS00320 (pYT3_0320) | 43787..44164 | + | 378 | WP_001326174 | hypothetical protein | - |
| HXC46_RS00325 (pYT3_0325) | 44309..44590 | + | 282 | WP_000805625 | type IV conjugative transfer system protein TraL | traL |
| HXC46_RS00330 (pYT3_0330) | 44587..45213 | + | 627 | WP_001049717 | TraE/TraK family type IV conjugative transfer system protein | traE |
| HXC46_RS00335 (pYT3_0335) | 45197..46114 | + | 918 | WP_000794249 | type-F conjugative transfer system secretin TraK | traK |
| HXC46_RS00340 (pYT3_0340) | 46114..47427 | + | 1314 | WP_024131605 | TraB/VirB10 family protein | traB |
| HXC46_RS00345 (pYT3_0345) | 47424..48002 | + | 579 | WP_000793435 | type IV conjugative transfer system lipoprotein TraV | traV |
| HXC46_RS00350 (pYT3_0350) | 48006..48398 | + | 393 | WP_000479535 | TraA family conjugative transfer protein | - |
| HXC46_RS00355 (pYT3_0355) | 48683..49945 | + | 1263 | WP_000608644 | IS1380-like element ISEcp1 family transposase | - |
| HXC46_RS00360 (pYT3_0360) | 50269..51414 | + | 1146 | WP_000976514 | extended-spectrum class C beta-lactamase CMY-2 | - |
| HXC46_RS00365 (pYT3_0365) | 51508..52041 | + | 534 | WP_001221666 | lipocalin family protein | - |
| HXC46_RS00370 (pYT3_0370) | 52038..52355 | - | 318 | WP_000118520 | quaternary ammonium compound efflux SMR transporter SugE | - |
| HXC46_RS00375 | 52612..52977 | + | 366 | Protein_75 | LuxR family transcriptional regulator | - |