T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 48240..57330
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CHC41_RS25440 (CHC41_25435) | 44271..44504 | - | 234 | WP_001191890 | hypothetical protein | - |
| CHC41_RS25445 (CHC41_25440) | 44486..45103 | - | 618 | WP_001249395 | hypothetical protein | - |
| CHC41_RS25450 (CHC41_25445) | 45271..48243 | + | 2973 | WP_001326173 | MobH family relaxase | - |
| CHC41_RS25455 (CHC41_25450) | 48240..50105 | + | 1866 | WP_000178857 | conjugative transfer system coupling protein TraD | virb4 |
| CHC41_RS25460 (CHC41_25455) | 50155..50700 | + | 546 | WP_000228720 | hypothetical protein | - |
| CHC41_RS25465 (CHC41_25460) | 50657..51286 | + | 630 | WP_000743449 | DUF4400 domain-containing protein | tfc7 |
| CHC41_RS25470 (CHC41_25465) | 51296..51742 | + | 447 | WP_000122507 | hypothetical protein | - |
| CHC41_RS25475 (CHC41_25470) | 51752..52129 | + | 378 | WP_000869297 | hypothetical protein | - |
| CHC41_RS25480 (CHC41_25475) | 52129..52791 | + | 663 | WP_001231464 | hypothetical protein | - |
| CHC41_RS25485 (CHC41_25480) | 53127..53492 | + | 366 | WP_001052530 | hypothetical protein | - |
| CHC41_RS25490 (CHC41_25485) | 53637..53918 | + | 282 | WP_000805625 | type IV conjugative transfer system protein TraL | traL |
| CHC41_RS25495 (CHC41_25490) | 53915..54541 | + | 627 | WP_001049717 | TraE/TraK family type IV conjugative transfer system protein | traE |
| CHC41_RS25500 (CHC41_25495) | 54525..55442 | + | 918 | WP_000794249 | type-F conjugative transfer system secretin TraK | traK |
| CHC41_RS25505 (CHC41_25500) | 55442..56755 | + | 1314 | WP_024131605 | TraB/VirB10 family protein | traB |
| CHC41_RS25510 (CHC41_25505) | 56752..57330 | + | 579 | WP_000793435 | type IV conjugative transfer system lipoprotein TraV | traV |
| CHC41_RS25515 (CHC41_25510) | 57334..57726 | + | 393 | WP_000479535 | TraA family conjugative transfer protein | - |
| CHC41_RS25520 (CHC41_25515) | 58011..59274 | + | 1264 | Protein_82 | IS1380-like element ISEcp1 family transposase | - |
| CHC41_RS25525 (CHC41_25520) | 59598..60743 | + | 1146 | WP_000976514 | extended-spectrum class C beta-lactamase CMY-2 | - |
| CHC41_RS25530 (CHC41_25525) | 60837..61370 | + | 534 | WP_001221666 | lipocalin family protein | - |
| CHC41_RS25535 (CHC41_25530) | 61367..61684 | - | 318 | WP_000118520 | quaternary ammonium compound efflux SMR transporter SugE | - |
| CHC41_RS27500 (CHC41_25535) | 61941..62306 | + | 366 | Protein_86 | LuxR family transcriptional regulator | - |