T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 39180..64342
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LD277_RS30085 (LD277_30125) | 39180..41417 | - | 2238 | WP_101429066 | type IV conjugative transfer system coupling protein TraD | virb4 |
| LD277_RS30090 (LD277_30130) | 41551..41880 | - | 330 | WP_223856629 | hypothetical protein | - |
| LD277_RS30095 (LD277_30135) | 41888..42226 | - | 339 | WP_032072912 | tetratricopeptide repeat protein | - |
| LD277_RS30100 (LD277_30140) | 42301..42732 | - | 432 | WP_008324118 | entry exclusion protein | - |
| LD277_RS30105 (LD277_30145) | 42754..45576 | - | 2823 | WP_008324119 | conjugal transfer mating-pair stabilization protein TraG | traG |
| LD277_RS30110 (LD277_30150) | 45576..46946 | - | 1371 | WP_016247527 | conjugal transfer pilus assembly protein TraH | traH |
| LD277_RS30115 (LD277_30155) | 46933..47361 | - | 429 | WP_008324122 | hypothetical protein | - |
| LD277_RS30120 (LD277_30160) | 47354..47908 | - | 555 | WP_008324125 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | traF |
| LD277_RS30125 (LD277_30165) | 47898..48146 | - | 249 | WP_016479982 | type-F conjugative transfer system pilin chaperone TraQ | - |
| LD277_RS30130 (LD277_30170) | 48163..48912 | - | 750 | WP_008324127 | type-F conjugative transfer system pilin assembly protein TraF | traF |
| LD277_RS30135 (LD277_30175) | 48943..49131 | - | 189 | WP_008324128 | conjugal transfer protein TrbE | - |
| LD277_RS30140 (LD277_30180) | 49163..51016 | - | 1854 | WP_016479983 | type-F conjugative transfer system mating-pair stabilization protein TraN | traN |
| LD277_RS30145 (LD277_30185) | 51013..51642 | - | 630 | WP_008324130 | type-F conjugative transfer system pilin assembly protein TrbC | trbC |
| LD277_RS30150 (LD277_30190) | 51659..52645 | - | 987 | WP_042934586 | conjugal transfer pilus assembly protein TraU | traU |
| LD277_RS30155 (LD277_30195) | 52648..53295 | - | 648 | WP_008324132 | type-F conjugative transfer system protein TraW | traW |
| LD277_RS30160 (LD277_30200) | 53295..53642 | - | 348 | WP_008324133 | type-F conjugative transfer system protein TrbI | - |
| LD277_RS30165 (LD277_30205) | 53639..56269 | - | 2631 | WP_008324134 | type IV secretion system protein TraC | virb4 |
| LD277_RS30170 (LD277_30210) | 56262..56828 | - | 567 | WP_008324135 | conjugal transfer pilus-stabilizing protein TraP | - |
| LD277_RS30175 (LD277_30215) | 56818..57219 | - | 402 | WP_016479985 | hypothetical protein | - |
| LD277_RS30180 (LD277_30220) | 57203..57388 | - | 186 | WP_008324139 | hypothetical protein | - |
| LD277_RS30185 (LD277_30225) | 57392..57616 | - | 225 | WP_008324141 | TraR/DksA C4-type zinc finger protein | - |
| LD277_RS30190 (LD277_30230) | 57736..58275 | - | 540 | WP_016247533 | type IV conjugative transfer system lipoprotein TraV | traV |
| LD277_RS30195 (LD277_30235) | 58297..59691 | - | 1395 | WP_016479986 | F-type conjugal transfer pilus assembly protein TraB | traB |
| LD277_RS30200 (LD277_30240) | 59678..60421 | - | 744 | WP_008324157 | type-F conjugative transfer system secretin TraK | traK |
| LD277_RS30205 (LD277_30245) | 60408..60974 | - | 567 | WP_016247535 | type IV conjugative transfer system protein TraE | traE |
| LD277_RS30210 (LD277_30250) | 60989..61294 | - | 306 | WP_016479987 | type IV conjugative transfer system protein TraL | traL |
| LD277_RS30215 (LD277_30255) | 61445..61795 | - | 351 | WP_016247536 | type IV conjugative transfer system pilin TraA | - |
| LD277_RS30220 (LD277_30260) | 61853..62077 | - | 225 | WP_008324165 | TraY domain-containing protein | - |
| LD277_RS30225 (LD277_30265) | 62164..62853 | - | 690 | WP_008324166 | hypothetical protein | - |
| LD277_RS30230 (LD277_30270) | 63042..63434 | - | 393 | WP_008324167 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LD277_RS30235 (LD277_30275) | 63866..64342 | + | 477 | WP_008324168 | transglycosylase SLT domain-containing protein | virB1 |
| LD277_RS30240 (LD277_30280) | 64389..64919 | - | 531 | WP_008324170 | antirestriction protein | - |
| LD277_RS30245 (LD277_30285) | 65546..66376 | - | 831 | WP_008324171 | N-6 DNA methylase | - |
| LD277_RS30250 (LD277_30290) | 66419..66682 | - | 264 | WP_008324174 | hypothetical protein | - |
| LD277_RS30255 (LD277_30295) | 66768..67112 | - | 345 | WP_008324177 | hypothetical protein | - |
| LD277_RS30260 (LD277_30300) | 67159..67446 | - | 288 | WP_008324178 | hypothetical protein | - |
| LD277_RS30265 (LD277_30305) | 67500..67874 | - | 375 | WP_008324180 | hypothetical protein | - |
| LD277_RS30270 (LD277_30310) | 68501..68860 | - | 360 | WP_015493069 | hypothetical protein | - |
| LD277_RS30275 (LD277_30315) | 68922..69245 | - | 324 | WP_008324183 | hypothetical protein | - |