T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 7308..16975
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXC48_RS00015 (pTi-SAKURA_p003) | 2594..3319 | - | 726 | WP_003523894 | nopaline ABC transporter permease NocM | - |
| HXC48_RS00020 (pTi-SAKURA_p004) | 3321..4031 | - | 711 | WP_010891638 | nopaline ABC transporter permease NocQ | - |
| HXC48_RS00025 (pTi-SAKURA_p005) | 4106..4957 | - | 852 | WP_010891637 | nopaline ABC transporter substrate-binding protein NocT | - |
| HXC48_RS00030 (pTi-SAKURA_p006) | 5022..5795 | - | 774 | WP_010891636 | nopaline ABC transporter ATP-binding protein NocP | - |
| HXC48_RS00035 (pTi-SAKURA_p007) | 6037..6951 | + | 915 | WP_233278942 | LysR family transcriptional regulator | - |
| HXC48_RS00040 | 7048..7257 | - | 210 | WP_172690757 | hypothetical protein | - |
| HXC48_RS00045 (pTi-SAKURA_p008) | 7308..8624 | - | 1317 | WP_010891634 | IncP-type conjugal transfer protein TrbI | virB10 |
| HXC48_RS00050 (pTi-SAKURA_p009) | 8637..9113 | - | 477 | WP_010891633 | conjugal transfer protein TrbH | - |
| HXC48_RS00055 (pTi-SAKURA_p010) | 9113..9967 | - | 855 | WP_010891632 | P-type conjugative transfer protein TrbG | virB9 |
| HXC48_RS00060 (pTi-SAKURA_p011) | 9985..10647 | - | 663 | WP_010891631 | conjugal transfer protein TrbF | virB8 |
| HXC48_RS00065 (pTi-SAKURA_p012) | 10662..11858 | - | 1197 | WP_010974835 | P-type conjugative transfer protein TrbL | virB6 |
| HXC48_RS00070 (pTi-SAKURA_p013) | 11852..12070 | - | 219 | WP_010891629 | entry exclusion protein TrbK | - |
| HXC48_RS00075 (pTi-SAKURA_p014) | 12067..12825 | - | 759 | WP_233278946 | P-type conjugative transfer protein TrbJ | virB5 |
| HXC48_RS00080 (pTi-SAKURA_p015) | 12842..15310 | - | 2469 | WP_010891627 | conjugal transfer protein TrbE | virb4 |
| HXC48_RS00085 (pTi-SAKURA_p016) | 15321..15620 | - | 300 | WP_010891626 | conjugal transfer protein TrbD | virB3 |
| HXC48_RS00090 (pTi-SAKURA_p017) | 15613..16014 | - | 402 | WP_010891625 | conjugal transfer pilin TrbC | virB2 |
| HXC48_RS00095 (pTi-SAKURA_p018) | 16004..16975 | - | 972 | WP_010891624 | P-type conjugative transfer ATPase TrbB | virB11 |
| HXC48_RS00100 (pTi-SAKURA_p019) | 16972..17607 | - | 636 | WP_010891623 | acyl-homoserine-lactone synthase | - |
| HXC48_RS00105 (pTi-SAKURA_p020) | 17971..19188 | + | 1218 | WP_010891622 | plasmid partitioning protein RepA | - |
| HXC48_RS00110 (pTi-SAKURA_p021) | 19418..20428 | + | 1011 | WP_010891621 | plasmid partitioning protein RepB | - |
| HXC48_RS00115 (pTi-SAKURA_p023) | 20643..21962 | + | 1320 | WP_010891620 | plasmid replication protein RepC | - |