T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 48240..57330
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D6D39_RS23975 (D6D39_24370) | 44271..44504 | - | 234 | WP_001191890 | hypothetical protein | - |
| D6D39_RS23980 (D6D39_24375) | 44486..45103 | - | 618 | WP_001249395 | hypothetical protein | - |
| D6D39_RS23985 (D6D39_24380) | 45271..48243 | + | 2973 | WP_001326173 | MobH family relaxase | - |
| D6D39_RS23990 (D6D39_24385) | 48240..50105 | + | 1866 | WP_000178857 | conjugative transfer system coupling protein TraD | virb4 |
| D6D39_RS23995 (D6D39_24390) | 50155..50700 | + | 546 | WP_000228720 | hypothetical protein | - |
| D6D39_RS24000 (D6D39_24395) | 50657..51286 | + | 630 | WP_000743449 | DUF4400 domain-containing protein | tfc7 |
| D6D39_RS24005 (D6D39_24400) | 51296..51742 | + | 447 | WP_000122507 | hypothetical protein | - |
| D6D39_RS24010 (D6D39_24405) | 51752..52129 | + | 378 | WP_000869297 | hypothetical protein | - |
| D6D39_RS24015 (D6D39_24410) | 52129..52791 | + | 663 | WP_001231464 | hypothetical protein | - |
| D6D39_RS24020 (D6D39_24415) | 53127..53492 | + | 366 | WP_001052530 | hypothetical protein | - |
| D6D39_RS24025 (D6D39_24420) | 53637..53918 | + | 282 | WP_000805625 | type IV conjugative transfer system protein TraL | traL |
| D6D39_RS24030 (D6D39_24425) | 53915..54541 | + | 627 | WP_001049717 | TraE/TraK family type IV conjugative transfer system protein | traE |
| D6D39_RS24035 (D6D39_24430) | 54525..55442 | + | 918 | WP_000794249 | type-F conjugative transfer system secretin TraK | traK |
| D6D39_RS24040 (D6D39_24435) | 55442..56755 | + | 1314 | WP_024131605 | TraB/VirB10 family protein | traB |
| D6D39_RS24045 (D6D39_24440) | 56752..57330 | + | 579 | WP_000793435 | type IV conjugative transfer system lipoprotein TraV | traV |
| D6D39_RS24050 (D6D39_24445) | 57334..57726 | + | 393 | WP_000479535 | TraA family conjugative transfer protein | - |
| D6D39_RS24055 (D6D39_24450) | 58011..59273 | + | 1263 | WP_000608644 | IS1380-like element ISEcp1 family transposase | - |
| D6D39_RS24060 (D6D39_24455) | 59597..60742 | + | 1146 | WP_000976514 | extended-spectrum class C beta-lactamase CMY-2 | - |
| D6D39_RS24065 (D6D39_24460) | 60836..61369 | + | 534 | WP_001221666 | lipocalin family protein | - |
| D6D39_RS24070 (D6D39_24465) | 61366..61683 | - | 318 | WP_000118520 | quaternary ammonium compound efflux SMR transporter SugE | - |
| D6D39_RS25610 (D6D39_24470) | 61940..62305 | + | 366 | Protein_86 | LuxR family transcriptional regulator | - |