T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 179443..193511
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| At1D1609_RS28140 (At1D1609_54250) | 174474..177800 | + | 3327 | WP_104680476 | Ti-type conjugative transfer relaxase TraA | - |
| At1D1609_RS28145 | 177797..178330 | + | 534 | Protein_177 | conjugative transfer signal peptidase TraF | - |
| At1D1609_RS28150 (At1D1609_54260) | 178323..179426 | + | 1104 | WP_233282735 | conjugal transfer protein TraB | - |
| At1D1609_RS28155 (At1D1609_54270) | 179443..180057 | + | 615 | WP_104680478 | TraH family protein | virB1 |
| At1D1609_RS28160 (At1D1609_54280) | 180097..180828 | - | 732 | WP_104680479 | hypothetical protein | - |
| At1D1609_RS28165 (At1D1609_54290) | 180818..181537 | - | 720 | WP_104680480 | hypothetical protein | - |
| At1D1609_RS28170 (At1D1609_54300) | 181534..182103 | - | 570 | WP_104680481 | hypothetical protein | - |
| At1D1609_RS28175 (At1D1609_54310) | 182191..182403 | - | 213 | WP_104680482 | helix-turn-helix transcriptional regulator | - |
| At1D1609_RS28180 (At1D1609_54320) | 182619..182942 | + | 324 | WP_104680483 | transcriptional repressor TraM | - |
| At1D1609_RS28185 (At1D1609_54330) | 182945..183649 | - | 705 | WP_104680484 | autoinducer binding domain-containing protein | - |
| At1D1609_RS28190 (At1D1609_54340) | 183997..185295 | - | 1299 | WP_104680485 | IncP-type conjugal transfer protein TrbI | virB10 |
| At1D1609_RS28195 (At1D1609_54350) | 185307..185747 | - | 441 | WP_104680486 | conjugal transfer protein TrbH | - |
| At1D1609_RS28200 (At1D1609_54360) | 185751..186563 | - | 813 | WP_104680487 | P-type conjugative transfer protein TrbG | virB9 |
| At1D1609_RS28205 (At1D1609_54370) | 186581..187243 | - | 663 | WP_104680488 | conjugal transfer protein TrbF | virB8 |
| At1D1609_RS28210 (At1D1609_54380) | 187264..188445 | - | 1182 | WP_104680489 | P-type conjugative transfer protein TrbL | virB6 |
| At1D1609_RS28215 (At1D1609_54390) | 188439..188639 | - | 201 | WP_104680490 | entry exclusion protein TrbK | - |
| At1D1609_RS28220 (At1D1609_54400) | 188636..189433 | - | 798 | WP_104680491 | P-type conjugative transfer protein TrbJ | virB5 |
| At1D1609_RS28225 (At1D1609_54410) | 189411..191861 | - | 2451 | WP_104680492 | conjugal transfer protein TrbE | virb4 |
| At1D1609_RS28230 (At1D1609_54420) | 191872..192171 | - | 300 | WP_104680493 | conjugal transfer protein TrbD | virB3 |
| At1D1609_RS28235 (At1D1609_54430) | 192164..192544 | - | 381 | WP_104680494 | TrbC/VirB2 family protein | virB2 |
| At1D1609_RS28240 (At1D1609_54440) | 192534..193511 | - | 978 | WP_104680495 | P-type conjugative transfer ATPase TrbB | virB11 |
| At1D1609_RS28245 (At1D1609_54450) | 193522..194145 | - | 624 | WP_104680496 | acyl-homoserine-lactone synthase TraI | - |
| At1D1609_RS28255 (At1D1609_54460) | 194641..197616 | + | 2976 | WP_104680305 | Tn3 family transposase | - |
| At1D1609_RS28260 (At1D1609_54470) | 197636..198358 | - | 723 | WP_104680498 | AcvB/VirJ family lysyl-phosphatidylglycerol hydrolase | - |