T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 46751..55841
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HS820_RS00345 (pNDM102337_67) | 42782..43015 | - | 234 | WP_001191890 | hypothetical protein | - |
| HS820_RS00350 (pNDM102337_68) | 42997..43614 | - | 618 | WP_001249395 | hypothetical protein | - |
| HS820_RS00355 (pNDM102337_69) | 43782..46754 | + | 2973 | WP_001326173 | MobH family relaxase | - |
| HS820_RS00360 (pNDM102337_70) | 46751..48616 | + | 1866 | WP_000178857 | conjugative transfer system coupling protein TraD | virb4 |
| HS820_RS00365 (pNDM102337_71) | 48627..49211 | + | 585 | WP_000332868 | hypothetical protein | - |
| HS820_RS00370 (pNDM102337_72) | 49168..49797 | + | 630 | WP_000743449 | DUF4400 domain-containing protein | tfc7 |
| HS820_RS00375 (pNDM102337_73) | 49807..50253 | + | 447 | WP_000122507 | hypothetical protein | - |
| HS820_RS00380 (pNDM102337_74) | 50263..50640 | + | 378 | WP_000869297 | hypothetical protein | - |
| HS820_RS00385 (pNDM102337_75) | 50640..51302 | + | 663 | WP_001231464 | hypothetical protein | - |
| HS820_RS00390 | 51483..51626 | + | 144 | WP_001275801 | hypothetical protein | - |
| HS820_RS00395 (pNDM102337_76) | 51638..52003 | + | 366 | WP_001052530 | hypothetical protein | - |
| HS820_RS00400 (pNDM102337_77) | 52148..52429 | + | 282 | WP_000805625 | type IV conjugative transfer system protein TraL | traL |
| HS820_RS00405 (pNDM102337_78) | 52426..53052 | + | 627 | WP_001049717 | TraE/TraK family type IV conjugative transfer system protein | traE |
| HS820_RS00410 (pNDM102337_79) | 53036..53953 | + | 918 | WP_000794249 | type-F conjugative transfer system secretin TraK | traK |
| HS820_RS00415 (pNDM102337_80) | 53953..55266 | + | 1314 | WP_024131605 | TraB/VirB10 family protein | traB |
| HS820_RS00420 (pNDM102337_81) | 55263..55841 | + | 579 | WP_000793435 | type IV conjugative transfer system lipoprotein TraV | traV |
| HS820_RS00425 (pNDM102337_82) | 55845..56237 | + | 393 | WP_000479535 | TraA family conjugative transfer protein | - |
| HS820_RS00430 (pNDM102337_83) | 56522..57784 | + | 1263 | WP_000608644 | IS1380-like element ISEcp1 family transposase | - |
| HS820_RS00435 (pNDM102337_84) | 58108..59253 | + | 1146 | WP_015058212 | class C beta-lactamase CMY-6 | - |
| HS820_RS00440 (pNDM102337_85) | 59347..59880 | + | 534 | WP_001221666 | lipocalin family protein | - |
| HS820_RS00445 (pNDM102337_86) | 59877..60194 | - | 318 | WP_000118520 | quaternary ammonium compound efflux SMR transporter SugE | - |