T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 1729..30261
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HTG38_RS00005 (SP547_pKM00305) | 1..189 | - | 189 | WP_001063224 | hypothetical protein | - |
| HTG38_RS00010 (SP547_pKM00005) | 361..1335 | + | 975 | WP_000368849 | conjugative transfer protein TrsA | - |
| HTG38_RS00015 (SP547_pKM00010) | 1352..1669 | + | 318 | WP_172686244 | CagC family type IV secretion system protein | - |
| HTG38_RS00020 (SP547_pKM00015) | 1729..2136 | + | 408 | WP_000110157 | hypothetical protein | trsC |
| HTG38_RS00025 (SP547_pKM00020) | 2123..2806 | + | 684 | WP_000979860 | TrsD/TraD family conjugative transfer protein | trsD |
| HTG38_RS00030 (SP547_pKM00025) | 2821..4839 | + | 2019 | WP_001795400 | DUF87 domain-containing protein | virb4 |
| HTG38_RS00035 (SP547_pKM00030) | 4851..6131 | + | 1281 | WP_000702361 | membrane protein | trsF |
| HTG38_RS00040 (SP547_pKM00035) | 6149..7225 | + | 1077 | WP_000269385 | CHAP domain-containing protein | trsG |
| HTG38_RS00045 (SP547_pKM00040) | 7235..7720 | + | 486 | WP_000735569 | TrsH/TraH family protein | - |
| HTG38_RS00050 (SP547_pKM00045) | 7736..9838 | + | 2103 | WP_001094109 | DNA topoisomerase III | - |
| HTG38_RS00055 (SP547_pKM00050) | 9854..10318 | + | 465 | WP_000715273 | hypothetical protein | trsJ |
| HTG38_RS00060 (SP547_pKM00055) | 10315..11955 | + | 1641 | WP_000209435 | VirD4-like conjugal transfer protein, CD1115 family | - |
| HTG38_RS00065 (SP547_pKM00060) | 12033..12950 | + | 918 | WP_000383804 | conjugal transfer protein TrbL family protein | trsL |
| HTG38_RS00070 (SP547_pKM00065) | 12967..13359 | + | 393 | WP_000608970 | single-stranded DNA-binding protein | - |
| HTG38_RS00075 (SP547_pKM00070) | 13416..14147 | + | 732 | WP_000869300 | hypothetical protein | - |
| HTG38_RS00080 (SP547_pKM00075) | 14184..14807 | + | 624 | WP_000831307 | hypothetical protein | - |
| HTG38_RS00085 | 14823..15059 | + | 237 | WP_237449473 | hypothetical protein | - |
| HTG38_RS00090 (SP547_pKM00085) | 15117..15791 | - | 675 | WP_001105987 | IS6-like element IS257 family transposase | - |
| HTG38_RS00095 | 15807..16739 | + | 933 | WP_237449478 | CHAP domain-containing protein | trsG |
| HTG38_RS00100 (SP547_pKM00095) | 16755..17249 | + | 495 | WP_099994923 | hypothetical protein | - |
| HTG38_RS00105 (SP547_pKM00105) | 17518..17856 | + | 339 | WP_099994922 | single-stranded DNA-binding protein | - |
| HTG38_RS00110 (SP547_pKM00110) | 18263..18523 | + | 261 | WP_237449474 | hypothetical protein | - |
| HTG38_RS00115 (SP547_pKM00115) | 18580..18930 | + | 351 | WP_233519680 | hypothetical protein | - |
| HTG38_RS00120 (SP547_pKM00120) | 18924..19223 | + | 300 | WP_237449475 | hypothetical protein | - |
| HTG38_RS00125 (SP547_pKM00130) | 19864..20013 | + | 150 | WP_172686245 | hypothetical protein | - |
| HTG38_RS00130 (SP547_pKM00135) | 20337..20795 | + | 459 | WP_140223247 | HTH domain-containing protein | - |
| HTG38_RS00135 (SP547_pKM00145) | 22266..22685 | + | 420 | WP_140223246 | hypothetical protein | - |
| HTG38_RS00140 (SP547_pKM00150) | 22699..23418 | + | 720 | WP_237449476 | hypothetical protein | - |
| HTG38_RS00145 (SP547_pKM00155) | 23479..25317 | + | 1839 | WP_172686247 | VirD4-like conjugal transfer protein, CD1115 family | - |
| HTG38_RS00150 (SP547_pKM00160) | 25389..25847 | + | 459 | WP_140223243 | hypothetical protein | - |
| HTG38_RS00155 (SP547_pKM00165) | 25902..26237 | + | 336 | WP_237449477 | hypothetical protein | virB2 |
| HTG38_RS00160 (SP547_pKM00170) | 26340..27266 | + | 927 | WP_140223242 | conjugal transfer protein TrbL family protein | - |
| HTG38_RS00165 (SP547_pKM00175) | 27270..27863 | + | 594 | WP_172686248 | hypothetical protein | - |
| HTG38_RS00170 (SP547_pKM00180) | 27745..30261 | + | 2517 | WP_237449468 | hypothetical protein | virb4 |
| HTG38_RS00175 (SP547_pKM00185) | 30378..30938 | + | 561 | WP_237449469 | hypothetical protein | - |
| HTG38_RS00180 (SP547_pKM00195) | 31163..31837 | - | 675 | WP_001105987 | IS6-like element IS257 family transposase | - |
| HTG38_RS00185 | 31875..33527 | - | 1653 | WP_237449470 | ArdC family protein | - |
| HTG38_RS00190 (SP547_pKM00205) | 33531..33719 | - | 189 | WP_000921494 | hypothetical protein | - |