T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 4148..14936
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NDI72_RS20415 (NDI72_20405) | 1782..2921 | - | 1140 | WP_283801649 | plasmid replication initiator TrfA | - |
| NDI72_RS20420 (NDI72_20410) | 3069..3413 | - | 345 | WP_283801628 | single-stranded DNA-binding protein | - |
| NDI72_RS20425 (NDI72_20415) | 3513..3896 | + | 384 | WP_041646689 | transcriptional regulator | - |
| NDI72_RS20430 (NDI72_20420) | 4148..5107 | + | 960 | WP_014579515 | P-type conjugative transfer ATPase TrbB | virB11 |
| NDI72_RS20435 (NDI72_20425) | 5133..5558 | + | 426 | WP_014579514 | conjugal transfer system pilin TrbC | virB2 |
| NDI72_RS20440 (NDI72_20430) | 5561..5872 | + | 312 | WP_008929954 | conjugal transfer protein TrbD | virB3 |
| NDI72_RS20445 (NDI72_20435) | 5872..8409 | + | 2538 | WP_283801650 | VirB4 family type IV secretion/conjugal transfer ATPase | virb4 |
| NDI72_RS20450 (NDI72_20440) | 8409..9191 | + | 783 | WP_269129290 | conjugal transfer protein TrbF | virB8 |
| NDI72_RS20455 (NDI72_20445) | 9209..10114 | + | 906 | WP_283801629 | P-type conjugative transfer protein TrbG | virB9 |
| NDI72_RS20460 (NDI72_20450) | 10117..10626 | + | 510 | WP_283801630 | conjugal transfer protein TrbH | - |
| NDI72_RS20465 (NDI72_20455) | 10630..12057 | + | 1428 | WP_269129287 | TrbI/VirB10 family protein | virB10 |
| NDI72_RS20470 (NDI72_20460) | 12076..12837 | + | 762 | WP_269129286 | P-type conjugative transfer protein TrbJ | virB5 |
| NDI72_RS20475 (NDI72_20465) | 12847..13074 | + | 228 | WP_269129285 | entry exclusion lipoprotein TrbK | - |
| NDI72_RS20480 (NDI72_20470) | 13086..14936 | + | 1851 | WP_283801631 | P-type conjugative transfer protein TrbL | virB6 |
| NDI72_RS20485 (NDI72_20475) | 14956..15438 | + | 483 | WP_283801632 | hypothetical protein | - |
| NDI72_RS20490 (NDI72_20480) | 15450..16085 | + | 636 | WP_283801633 | muramidase | - |
| NDI72_RS20495 (NDI72_20485) | 16082..16810 | + | 729 | WP_283801634 | TraX family protein | - |
| NDI72_RS20500 (NDI72_20490) | 16824..17249 | + | 426 | WP_014579501 | OmpA family protein | - |
| NDI72_RS20505 (NDI72_20495) | 17268..17537 | + | 270 | WP_283801635 | hypothetical protein | - |
| NDI72_RS20510 (NDI72_20500) | 17562..17816 | + | 255 | WP_283801636 | hypothetical protein | - |
| NDI72_RS20515 (NDI72_20505) | 17821..18327 | + | 507 | WP_283801637 | hypothetical protein | - |
| NDI72_RS20520 (NDI72_20510) | 18412..18717 | + | 306 | WP_283801638 | hypothetical protein | - |
| NDI72_RS20525 (NDI72_20515) | 18738..19361 | - | 624 | WP_283801639 | recombinase family protein | - |
| NDI72_RS20530 | 19370..19501 | - | 132 | WP_269129278 | hypothetical protein | - |