T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 14646..53494
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1A27_RS00320 (D1A27_00320) | 12362..14653 | - | 2292 | WP_072107381 | F-type conjugative transfer protein TrbC | - |
| D1A27_RS00325 (D1A27_00325) | 14646..15716 | - | 1071 | WP_039510685 | IncI1-type conjugal transfer protein TrbB | trbB |
| D1A27_RS00330 (D1A27_00330) | 15735..16943 | - | 1209 | WP_000121273 | IncI1-type conjugal transfer protein TrbA | trbA |
| D1A27_RS00335 (D1A27_00335) | 17235..17387 | + | 153 | WP_001331364 | Hok/Gef family protein | - |
| D1A27_RS00340 (D1A27_00340) | 17459..17710 | - | 252 | WP_001291964 | hypothetical protein | - |
| D1A27_RS30215 | 18211..18306 | + | 96 | WP_001303310 | DinQ-like type I toxin DqlB | - |
| D1A27_RS29215 (D1A27_00350) | 18371..18508 | - | 138 | WP_047088497 | hypothetical protein | - |
| D1A27_RS00355 (D1A27_00355) | 18553..19779 | - | 1227 | WP_024186316 | RNA-guided endonuclease TnpB family protein | - |
| D1A27_RS00360 (D1A27_00360) | 19838..20242 | + | 405 | WP_001175009 | IS200/IS605 family transposase | - |
| D1A27_RS00365 (D1A27_00365) | 20574..20783 | - | 210 | WP_032178830 | hemolysin expression modulator Hha | - |
| D1A27_RS00370 (D1A27_00370) | 20881..21543 | - | 663 | WP_000644794 | plasmid IncI1-type surface exclusion protein ExcA | - |
| D1A27_RS00375 (D1A27_00375) | 21614..23782 | - | 2169 | WP_000698368 | DotA/TraY family protein | traY |
| D1A27_RS00380 (D1A27_00380) | 23879..24463 | - | 585 | WP_032072591 | IncI1-type conjugal transfer protein TraX | - |
| D1A27_RS00385 (D1A27_00385) | 24492..25694 | - | 1203 | WP_001189156 | IncI1-type conjugal transfer protein TraW | traW |
| D1A27_RS00390 (D1A27_00390) | 25661..26275 | - | 615 | WP_000337399 | IncI1-type conjugal transfer protein TraV | traV |
| D1A27_RS00395 (D1A27_00395) | 26275..29319 | - | 3045 | WP_001024782 | IncI1-type conjugal transfer protein TraU | traU |
| D1A27_RS00400 (D1A27_00400) | 29409..30209 | - | 801 | WP_001164792 | IncI1-type conjugal transfer protein TraT | traT |
| D1A27_RS00405 (D1A27_00405) | 30193..30381 | - | 189 | WP_001277255 | putative conjugal transfer protein TraS | - |
| D1A27_RS00410 (D1A27_00410) | 30445..30849 | - | 405 | WP_000086960 | IncI1-type conjugal transfer protein TraR | traR |
| D1A27_RS00415 (D1A27_00415) | 30900..31427 | - | 528 | WP_001055569 | conjugal transfer protein TraQ | traQ |
| D1A27_RS00420 (D1A27_00420) | 31427..32131 | - | 705 | WP_023155244 | IncI1-type conjugal transfer protein TraP | traP |
| D1A27_RS00425 (D1A27_00425) | 32131..33420 | - | 1290 | WP_001271994 | conjugal transfer protein TraO | traO |
| D1A27_RS00430 (D1A27_00430) | 33423..34406 | - | 984 | WP_021513963 | IncI1-type conjugal transfer protein TraN | traN |
| D1A27_RS00435 (D1A27_00435) | 34417..35109 | - | 693 | WP_000138552 | DotI/IcmL family type IV secretion protein | traM |
| D1A27_RS00440 (D1A27_00440) | 35106..35453 | - | 348 | WP_001055900 | conjugal transfer protein | traL |
| D1A27_RS00445 (D1A27_00445) | 35471..39238 | - | 3768 | WP_006855639 | LPD7 domain-containing protein | - |
| D1A27_RS00450 (D1A27_00450) | 39328..39879 | - | 552 | WP_000014584 | phospholipase D family protein | - |
| D1A27_RS00455 (D1A27_00455) | 39894..40184 | - | 291 | WP_001299214 | hypothetical protein | traK |
| D1A27_RS00460 (D1A27_00460) | 40181..41329 | - | 1149 | WP_001024976 | plasmid transfer ATPase TraJ | virB11 |
| D1A27_RS00465 (D1A27_00465) | 41326..42144 | - | 819 | WP_000646097 | IncI1-type conjugal transfer lipoprotein TraI | traI |
| D1A27_RS00470 (D1A27_00470) | 42141..42599 | - | 459 | WP_001079808 | IncI1-type conjugal transfer lipoprotein TraH | - |
| D1A27_RS00475 (D1A27_00475) | 42994..43578 | - | 585 | WP_000977525 | histidine phosphatase family protein | - |
| D1A27_RS00480 (D1A27_00480) | 43638..44840 | - | 1203 | WP_000976353 | conjugal transfer protein TraF | - |
| D1A27_RS00485 (D1A27_00485) | 44926..45750 | - | 825 | WP_001690630 | conjugal transfer protein TraE | traE |
| D1A27_RS00490 (D1A27_00490) | 45901..47055 | - | 1155 | WP_073481693 | site-specific integrase | - |
| D1A27_RS29890 (D1A27_00495) | 47054..47461 | + | 408 | WP_227642478 | prepilin, shufflon protein A | - |
| D1A27_RS30290 (D1A27_00500) | 47458..47697 | - | 240 | Protein_55 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| D1A27_RS00505 (D1A27_00505) | 47691..49001 | - | 1311 | WP_117355371 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| D1A27_RS00510 (D1A27_00510) | 49001..49657 | - | 657 | WP_001193551 | A24 family peptidase | - |
| D1A27_RS00515 (D1A27_00515) | 49642..50202 | - | 561 | WP_000014005 | lytic transglycosylase domain-containing protein | virB1 |
| D1A27_RS00520 (D1A27_00520) | 50212..50826 | - | 615 | WP_000908228 | type 4 pilus major pilin | - |
| D1A27_RS00525 (D1A27_00525) | 50843..51928 | - | 1086 | WP_001208803 | type II secretion system F family protein | - |
| D1A27_RS00530 (D1A27_00530) | 51941..53494 | - | 1554 | WP_000362204 | ATPase, T2SS/T4P/T4SS family | virB11 |
| D1A27_RS00535 (D1A27_00535) | 53505..53957 | - | 453 | WP_117355372 | type IV pilus biogenesis protein PilP | - |
| D1A27_RS00540 (D1A27_00540) | 53944..55239 | - | 1296 | WP_117355373 | type 4b pilus protein PilO2 | - |
| D1A27_RS00545 (D1A27_00545) | 55232..56914 | - | 1683 | WP_000748143 | PilN family type IVB pilus formation outer membrane protein | - |
| D1A27_RS00550 (D1A27_00550) | 56928..57365 | - | 438 | WP_000539811 | type IV pilus biogenesis protein PilM | - |
| D1A27_RS00555 (D1A27_00555) | 57365..58432 | - | 1068 | WP_021513968 | type IV pilus biogenesis lipoprotein PilL | - |