T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 66010..93995
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RY846_RS26395 (RY846_26395) | 66010..68211 | - | 2202 | WP_023307203 | type IV conjugative transfer system coupling protein TraD | virb4 |
| RY846_RS26400 (RY846_26400) | 68345..69019 | - | 675 | WP_008324909 | tetratricopeptide repeat protein | - |
| RY846_RS26405 (RY846_26405) | 69094..69525 | - | 432 | WP_008324118 | entry exclusion protein | - |
| RY846_RS26410 (RY846_26410) | 69547..72369 | - | 2823 | WP_008324119 | conjugal transfer mating-pair stabilization protein TraG | traG |
| RY846_RS26415 (RY846_26415) | 72369..73739 | - | 1371 | WP_016247527 | conjugal transfer pilus assembly protein TraH | traH |
| RY846_RS26420 (RY846_26420) | 73726..74154 | - | 429 | WP_008324122 | hypothetical protein | - |
| RY846_RS26425 (RY846_26425) | 74147..74701 | - | 555 | WP_008324125 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | traF |
| RY846_RS26430 (RY846_26430) | 74691..74939 | - | 249 | WP_008324126 | type-F conjugative transfer system pilin chaperone TraQ | - |
| RY846_RS26435 (RY846_26435) | 74956..75705 | - | 750 | WP_008324127 | type-F conjugative transfer system pilin assembly protein TraF | traF |
| RY846_RS26440 (RY846_26440) | 75736..75924 | - | 189 | WP_008324128 | conjugal transfer protein TrbE | - |
| RY846_RS26445 (RY846_26445) | 75956..77809 | - | 1854 | WP_022652255 | type-F conjugative transfer system mating-pair stabilization protein TraN | traN |
| RY846_RS26450 (RY846_26450) | 77806..78435 | - | 630 | WP_008324130 | type-F conjugative transfer system pilin assembly protein TrbC | trbC |
| RY846_RS26455 (RY846_26455) | 78452..79438 | - | 987 | WP_032160671 | conjugal transfer pilus assembly protein TraU | traU |
| RY846_RS26460 (RY846_26460) | 79441..80088 | - | 648 | WP_008324132 | type-F conjugative transfer system protein TraW | traW |
| RY846_RS26465 (RY846_26465) | 80088..80435 | - | 348 | WP_008324133 | type-F conjugative transfer system protein TrbI | - |
| RY846_RS26470 (RY846_26470) | 80432..83062 | - | 2631 | WP_008324134 | type IV secretion system protein TraC | virb4 |
| RY846_RS26475 (RY846_26475) | 83055..83621 | - | 567 | WP_008324135 | conjugal transfer pilus-stabilizing protein TraP | - |
| RY846_RS26480 (RY846_26480) | 83611..84012 | - | 402 | WP_008324137 | hypothetical protein | - |
| RY846_RS26485 (RY846_26485) | 83996..84181 | - | 186 | WP_022652254 | hypothetical protein | - |
| RY846_RS26490 (RY846_26490) | 84185..84409 | - | 225 | WP_008324141 | TraR/DksA C4-type zinc finger protein | - |
| RY846_RS26495 (RY846_26495) | 84529..85068 | - | 540 | WP_008324154 | type IV conjugative transfer system lipoprotein TraV | traV |
| RY846_RS26500 (RY846_26500) | 85090..86484 | - | 1395 | WP_008324156 | F-type conjugal transfer pilus assembly protein TraB | traB |
| RY846_RS26505 (RY846_26505) | 86471..87214 | - | 744 | WP_008324157 | type-F conjugative transfer system secretin TraK | traK |
| RY846_RS26510 (RY846_26510) | 87201..87767 | - | 567 | WP_008324158 | type IV conjugative transfer system protein TraE | traE |
| RY846_RS26515 (RY846_26515) | 87782..88087 | - | 306 | WP_008324160 | type IV conjugative transfer system protein TraL | traL |
| RY846_RS26520 (RY846_26520) | 88238..88579 | - | 342 | WP_326926118 | type IV conjugative transfer system pilin TraA | - |
| RY846_RS26525 (RY846_26525) | 88688..89233 | + | 546 | WP_001493763 | plasmid pRiA4b ORF-3 family protein | - |
| RY846_RS26530 (RY846_26530) | 89370..89942 | + | 573 | WP_001493762 | recombinase family protein | - |
| RY846_RS26535 (RY846_26535) | 89979..91370 | + | 1392 | WP_001493761 | ISKra4-like element ISKpn19 family transposase | - |
| RY846_RS26540 (RY846_26540) | 91506..91730 | - | 225 | WP_008324165 | TraY domain-containing protein | - |
| RY846_RS26545 (RY846_26545) | 91817..92506 | - | 690 | WP_008324166 | hypothetical protein | - |
| RY846_RS26550 (RY846_26550) | 92695..93087 | - | 393 | WP_008324167 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| RY846_RS26555 (RY846_26555) | 93519..93995 | + | 477 | WP_008324168 | transglycosylase SLT domain-containing protein | virB1 |
| RY846_RS26560 (RY846_26560) | 94042..94572 | - | 531 | WP_008324170 | antirestriction protein | - |
| RY846_RS26565 (RY846_26565) | 95199..96029 | - | 831 | WP_022652253 | N-6 DNA methylase | - |
| RY846_RS26570 (RY846_26570) | 96072..96335 | - | 264 | WP_008324174 | hypothetical protein | - |
| RY846_RS26575 (RY846_26575) | 96421..96765 | - | 345 | WP_022652252 | hypothetical protein | - |
| RY846_RS26580 (RY846_26580) | 96812..97099 | - | 288 | WP_008324178 | hypothetical protein | - |
| RY846_RS26585 (RY846_26585) | 97153..97527 | - | 375 | WP_008324180 | hypothetical protein | - |
| RY846_RS26590 (RY846_26590) | 98248..98514 | - | 267 | WP_022652251 | hypothetical protein | - |
| RY846_RS26595 (RY846_26595) | 98576..98899 | - | 324 | WP_008324183 | hypothetical protein | - |