T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 52439..61529
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AFL46_RS12480 (AFL46_12500) | 47693..48838 | - | 1146 | WP_015056382 | class C beta-lactamase CMY-4 | - |
| AFL46_RS12485 (AFL46_12505) | 49293..50480 | - | 1188 | WP_080399009 | IS4 family transposase | - |
| AFL46_RS12490 (AFL46_12510) | 50586..51758 | - | 1173 | Protein_55 | IS1380-like element ISEcp1 family transposase | - |
| AFL46_RS12495 (AFL46_12515) | 52043..52435 | - | 393 | WP_000479535 | TraA family conjugative transfer protein | - |
| AFL46_RS12500 (AFL46_12520) | 52439..53017 | - | 579 | WP_000793435 | type IV conjugative transfer system lipoprotein TraV | traV |
| AFL46_RS12505 (AFL46_12525) | 53014..54327 | - | 1314 | WP_024131605 | TraB/VirB10 family protein | traB |
| AFL46_RS12510 (AFL46_12530) | 54327..55244 | - | 918 | WP_000794249 | type-F conjugative transfer system secretin TraK | traK |
| AFL46_RS12515 (AFL46_12535) | 55228..55854 | - | 627 | WP_001049717 | TraE/TraK family type IV conjugative transfer system protein | traE |
| AFL46_RS12520 (AFL46_12540) | 55851..56132 | - | 282 | WP_000805625 | type IV conjugative transfer system protein TraL | traL |
| AFL46_RS12525 (AFL46_12545) | 56277..56642 | - | 366 | WP_001052530 | hypothetical protein | - |
| AFL46_RS22010 | 56654..56797 | - | 144 | WP_001275801 | hypothetical protein | - |
| AFL46_RS12530 (AFL46_12550) | 56978..57640 | - | 663 | WP_001231464 | hypothetical protein | - |
| AFL46_RS12535 (AFL46_12555) | 57640..58017 | - | 378 | WP_000869297 | hypothetical protein | - |
| AFL46_RS22015 | 58259..58435 | - | 177 | WP_169342285 | hypothetical protein | - |
| AFL46_RS12540 (AFL46_12560) | 58483..59112 | - | 630 | WP_000743449 | DUF4400 domain-containing protein | tfc7 |
| AFL46_RS12545 (AFL46_12565) | 59069..59614 | - | 546 | WP_000228720 | hypothetical protein | - |
| AFL46_RS12550 (AFL46_12570) | 59664..61529 | - | 1866 | WP_000178857 | conjugative transfer system coupling protein TraD | virb4 |
| AFL46_RS12555 (AFL46_12575) | 61526..64498 | - | 2973 | WP_001326173 | MobH family relaxase | - |
| AFL46_RS12560 (AFL46_12580) | 64666..65283 | + | 618 | WP_001249395 | hypothetical protein | - |
| AFL46_RS12565 (AFL46_12585) | 65265..65498 | + | 234 | WP_001191890 | hypothetical protein | - |