Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 300457 |
| Name | oriT_pFlpAB-4  |
| Organism | Cloning vector pFlpAB-4 |
| Sequence Completeness | |
| NCBI accession of oriT (coordinates [strand]) | EU329004 (_) |
| oriT length | 261 nt |
| IRs (inverted repeats) | |
| Location of nic site | |
| Conserved sequence flanking the nic site |
|
| Note | oriT_RK2 |
oriT sequence
Download Length: 261 nt
>oriT_pFlpAB-4
CTTAAGGTATACTTTCCGCTGCATAACCCTGCTTCGGGGTCATTATAGCGATTTTTTCGGTATATCCATCCTTTTTCGCACGATATACAGGATTTTGCCAAAGGGTTCGTGTAGACTTTCCTTGGTGTATCCAACGGCGTCAGCCGGGCAGGATAGGTGAAGTAGGCCCACCCGCGAGCGGGTGTTCCTTCTTCACTGTCCCTTATTCGCACCTGGCGGTGCTCAACGGGAATCCTGCTCTGCGAGGCTGGCCGATAAGCT
CTTAAGGTATACTTTCCGCTGCATAACCCTGCTTCGGGGTCATTATAGCGATTTTTTCGGTATATCCATCCTTTTTCGCACGATATACAGGATTTTGCCAAAGGGTTCGTGTAGACTTTCCTTGGTGTATCCAACGGCGTCAGCCGGGCAGGATAGGTGAAGTAGGCCCACCCGCGAGCGGGTGTTCCTTCTTCACTGTCCCTTATTCGCACCTGGCGGTGCTCAACGGGAATCCTGCTCTGCGAGGCTGGCCGATAAGCT
Visualization of oriT structure (The oriT was characterized experimentally)
oriT secondary structure
Predicted by RNAfold.
Download structure file
Reference
[1] Barrett AR et al. (2008) Genetic tools for allelic replacement in Burkholderia species. Appl Environ Microbiol. 74(14):4498-508. [PMID:18502918]
Host bacterium
| ID | 670 | GenBank | EU329004 |
| Plasmid name | Cloning vector pFlpAB-4 | Incompatibility group | ColRNAI |
| Plasmid size | 10142 bp | Coordinate of oriT [Strand] | |
| Host baterium | Cloning vector pFlpAB-4 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |