Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 300448 |
| Name | oriT_pHBurk5  |
| Organism | Himar1-delivery and mutagenesis vector pHBurk5 |
| Sequence Completeness | |
| NCBI accession of oriT (coordinates [strand]) | EU919404 (_) |
| oriT length | 260 nt |
| IRs (inverted repeats) | |
| Location of nic site | |
| Conserved sequence flanking the nic site |
|
| Note | oriT_RK2 |
oriT sequence
Download Length: 260 nt
>oriT_pHBurk5
TTAAGGTATACTTTCCGCTGCATAACCCTGCTTCGGGGTCATTATAGCGATTTTTTCGGTATATCCATCCTTTTTCGCACGATATACAGGATTTTGCCAAAGGGTTCGTGTAGACTTTCCTTGGTGTATCCAACGGCGTCAGCCGGGCAGGATAGGTGAAGTAGGCCCACCCGCGAGCGGGTGTTCCTTCTTCACTGTCCCTTATTCGCACCTGGCGGTGCTCAACGGGAATCCTGCTCTGCGAGGCTGGCCGATAAGCT
TTAAGGTATACTTTCCGCTGCATAACCCTGCTTCGGGGTCATTATAGCGATTTTTTCGGTATATCCATCCTTTTTCGCACGATATACAGGATTTTGCCAAAGGGTTCGTGTAGACTTTCCTTGGTGTATCCAACGGCGTCAGCCGGGCAGGATAGGTGAAGTAGGCCCACCCGCGAGCGGGTGTTCCTTCTTCACTGTCCCTTATTCGCACCTGGCGGTGCTCAACGGGAATCCTGCTCTGCGAGGCTGGCCGATAAGCT
Visualization of oriT structure (The oriT was characterized experimentally)
oriT secondary structure
Predicted by RNAfold.
Download structure file
Reference
[1] Rholl DA et al. (2008) In vivo Himar1 transposon mutagenesis of Burkholderia pseudomallei. Appl Environ Microbiol. 74(24):7529-35. [PMID:18952878]
Host bacterium
| ID | 661 | GenBank | EU919404 |
| Plasmid name | Himar1-delivery and mutagenesis vector pHBurk5 | Incompatibility group | ColRNAI |
| Plasmid size | 7244 bp | Coordinate of oriT [Strand] | |
| Host baterium | Himar1-delivery and mutagenesis vector pHBurk5 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |