Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 300384 |
Name | oriT_pUC18T-mini-Tn7T-Zeo::loxP |
Organism | Transposition vector pUC18T-mini-Tn7T-Zeo::loxP |
Sequence Completeness | |
NCBI accession of oriT (coordinates [strand]) | EU215441 (_) |
oriT length | 257 nt |
IRs (inverted repeats) | |
Location of nic site | |
Conserved sequence flanking the nic site |
|
Note | oriT_RK2 |
oriT sequence
Download Length: 257 nt
>oriT_pUC18T-mini-Tn7T-Zeo::loxP
ATCGGCCAGCCTCGCAGAGCAGGATTCCCGTTGAGCACCGCCAGGTGCGAATAAGGGACAGTGAAGAAGGAACACCCGCTCGCGGGTGGGCCTACTTCACCTATCCTGCCCGGCTGACGCCGTTGGATACACCAAGGAAAGTCTACACGAACCCTTTGGCAAAATCCTGTATATCGTGCGAAAAAGGATGGATATACCGAAAAAATCGCTATAATGACCCCGAAGCAGGGTTATGCAGCGGAAAGTATACCTTAAGG
ATCGGCCAGCCTCGCAGAGCAGGATTCCCGTTGAGCACCGCCAGGTGCGAATAAGGGACAGTGAAGAAGGAACACCCGCTCGCGGGTGGGCCTACTTCACCTATCCTGCCCGGCTGACGCCGTTGGATACACCAAGGAAAGTCTACACGAACCCTTTGGCAAAATCCTGTATATCGTGCGAAAAAGGATGGATATACCGAAAAAATCGCTATAATGACCCCGAAGCAGGGTTATGCAGCGGAAAGTATACCTTAAGG
Visualization of oriT structure (The oriT was characterized experimentally)
oriT secondary structure
Predicted by RNAfold.
Download structure fileReference
[1] Choi KH et al. (2008) Genetic tools for select-agent-compliant manipulation of Burkholderia pseudomallei. Appl Environ Microbiol. 74(4):1064-75. [PMID:18156318]
Host bacterium
ID | 597 | GenBank | EU215441 |
Plasmid name | Transposition vector pUC18T-mini-Tn7T-Zeo::loxP | Incompatibility group | ColRNAI |
Plasmid size | 4220 bp | Coordinate of oriT [Strand] | |
Host baterium | Transposition vector pUC18T-mini-Tn7T-Zeo::loxP |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |