Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 300379 |
| Name | oriT_miniTn7-gat-rfp  |
| Organism | Site-specific integration vector miniTn7-gat-rfp |
| Sequence Completeness | |
| NCBI accession of oriT (coordinates [strand]) | HM150706 (_) |
| oriT length | 230 nt |
| IRs (inverted repeats) | |
| Location of nic site | |
| Conserved sequence flanking the nic site |
|
| Note | oriT_RP4 |
oriT sequence
Download Length: 230 nt
>oriT_miniTn7-gat-rfp
TCGCAGAGCAGGATTCCCGTTGAGCACCGCCAGGTGCGAATAAGGGACAGTGAAGAAGGAACACCCGCTCGCGGGTGGGCCTACTTCACCTATCCTGCCCGGCTGACGCCGTTGGATACACCAAGGAAAGTCTACACGAACCCTTTGGCAAAATCCTGTATATCGTGCGAAAAAGGATGGATATACCGAAAAAATCGCTATAATGACCCCGAAGCAGGGTTATGCAGCGG
TCGCAGAGCAGGATTCCCGTTGAGCACCGCCAGGTGCGAATAAGGGACAGTGAAGAAGGAACACCCGCTCGCGGGTGGGCCTACTTCACCTATCCTGCCCGGCTGACGCCGTTGGATACACCAAGGAAAGTCTACACGAACCCTTTGGCAAAATCCTGTATATCGTGCGAAAAAGGATGGATATACCGAAAAAATCGCTATAATGACCCCGAAGCAGGGTTATGCAGCGG
Visualization of oriT structure (The oriT was characterized experimentally)
oriT secondary structure
Predicted by RNAfold.
Download structure file
Reference
[1] Norris MH et al. (2010) Stable, site-specific fluorescent tagging constructs optimized for Burkholderia species. Appl Environ Microbiol. 76(22):7635-40. [PMID:20851961]
Host bacterium
| ID | 592 | GenBank | HM150706 |
| Plasmid name | Site-specific integration vector miniTn7-gat-rfp | Incompatibility group | - |
| Plasmid size | 3405 bp | Coordinate of oriT [Strand] | |
| Host baterium | Site-specific integration vector miniTn7-gat-rfp |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |