Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 300192 |
| Name | oriT_pattPGGsaacoriT  |
| Organism | Cloning vector pattPGGsaacoriT |
| Sequence Completeness | |
| NCBI accession of oriT (coordinates [strand]) | KF488569 (_) |
| oriT length | 242 nt |
| IRs (inverted repeats) | |
| Location of nic site | |
| Conserved sequence flanking the nic site |
|
| Note | oriT_RP4/RK2 |
oriT sequence
Download Length: 242 nt
>oriT_pattPGGsaacoriT
CGCCAGCCTCGCAGAGCAGGATTCCCGTTGAGCACCGCCAGGTGCGAATAAGGGACAGTGAAGAAGGAACACCCGCTCGCGGGTGGGCCTACTTCACCTATCCTGCCCGGCTGACGCCGTTGGATACACCAAGGAAAGTCTACACGAACCCTTTGGCAAAATCCTGTATATCGTGCGAAAAAGGATGGATATACCGAAAAAATCGCTATAATGACCCCGAAGCAGGGTTATGCAGCGGAAAA
CGCCAGCCTCGCAGAGCAGGATTCCCGTTGAGCACCGCCAGGTGCGAATAAGGGACAGTGAAGAAGGAACACCCGCTCGCGGGTGGGCCTACTTCACCTATCCTGCCCGGCTGACGCCGTTGGATACACCAAGGAAAGTCTACACGAACCCTTTGGCAAAATCCTGTATATCGTGCGAAAAAGGATGGATATACCGAAAAAATCGCTATAATGACCCCGAAGCAGGGTTATGCAGCGGAAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Reference
[1] Myronovskyi M et al. (2014) Iterative marker excision system. Appl Microbiol Biotechnol. 98(10):4557-70. [PMID:24473925]
Host bacterium
| ID | 405 | GenBank | KF488569 |
| Plasmid name | Cloning vector pattPGGsaacoriT | Incompatibility group | ColRNAI |
| Plasmid size | 3670 bp | Coordinate of oriT [Strand] | |
| Host baterium | Cloning vector pattPGGsaacoriT |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |