Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 300179 |
| Name | oriT_pBD62  |
| Organism | Integrative expression vector pBD62 |
| Sequence Completeness | |
| NCBI accession of oriT (coordinates [strand]) | KJ720574 (_) |
| oriT length | 257 nt |
| IRs (inverted repeats) | |
| Location of nic site | |
| Conserved sequence flanking the nic site |
|
| Note | oriT_RP4 |
oriT sequence
Download Length: 257 nt
>oriT_pBD62
GGTACCAGCGCTTTTCCGCTGCATAACCCTGCTTCGGGGTCATTATAGCGATTTTTTCGGTATATCCATCCTTTTTCGCACGATATACAGGATTTTGCCAAAGGGTTCGTGTAGACTTTCCTTGGTGTATCCAACGGCGTCAGCCGGGCAGGATAGGTGAAGTAGGCCCACCCGCGAGCGGGTGTTCCTTCTTCACTGTCCCTTATTCGCACCTGGCGGTGCTCAACGGGAATCCTGCTCTGCGAGGCTGGCCGGCG
GGTACCAGCGCTTTTCCGCTGCATAACCCTGCTTCGGGGTCATTATAGCGATTTTTTCGGTATATCCATCCTTTTTCGCACGATATACAGGATTTTGCCAAAGGGTTCGTGTAGACTTTCCTTGGTGTATCCAACGGCGTCAGCCGGGCAGGATAGGTGAAGTAGGCCCACCCGCGAGCGGGTGTTCCTTCTTCACTGTCCCTTATTCGCACCTGGCGGTGCTCAACGGGAATCCTGCTCTGCGAGGCTGGCCGGCG
Visualization of oriT structure (The oriT was characterized experimentally)
oriT secondary structure
Predicted by RNAfold.
Download structure file
Reference
[1] Das B et al. (2014) A Novel, Broad-Range, CTX桅-Derived Stable Integrative Expression Vector for Functional Studies. J Bacteriol. 196(23):4071-80. [PMID:25225263]
Host bacterium
| ID | 392 | GenBank | KJ720574 |
| Plasmid name | Integrative expression vector pBD62 | Incompatibility group | - |
| Plasmid size | 3226 bp | Coordinate of oriT [Strand] | |
| Host baterium | Integrative expression vector pBD62 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |