Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   300135
Name   oriT_pPL2 experimental
Organism   Shuttle integration vector pPL2
Sequence Completeness      
NCBI accession of oriT (coordinates [strand])   AJ417449 (_)
oriT length   363 nt
IRs (inverted repeats)    
Location of nic site      
Conserved sequence flanking the
  nic site    		  
Note   oriT_RP4

  oriT sequence  


Download         Length: 363 nt

>oriT_pPL2
CGCTTGCCCTCATCTGTTACGCCGGCGGTAGCCGGCCAGCCTCGCAGAGCAGGATTCCCGTTGAGCACCGCCAGGTGCGAATAAGGGACAGTGAAGAAGGAACACCCGCTCGCGGGTGGGCCTACTTCACCTATCCTGCCCGGCTGACGCCGTTGGATACACCAAGGAAAGTCTACACGAACCCTTTGGCAAAATCCTGTATATCGTGCGAAAAAGGATGGATATACCGAAAAAATCGCTATAATGACCCCGAAGCAGGGTTATGCAGCGGAAAAGCGCTGCTTCCCTGCTGTTTTGTGGAATATCTACCGACTGGAAACAGGCAAATGCAGGAAATTACTGAACTGAGGGGACAGGCGAGAG

Visualization of oriT structure (The oriT was characterized experimentally)

  oriT secondary structure

Predicted by RNAfold.

Download structure file

  Reference


[1] Lauer P et al. (2002) Construction, characterization, and use of two Listeria monocytogenes site-specific phage integration vectors. J Bacteriol. 184(15):4177-86. [PMID:12107135]


Host bacterium

ID   348 GenBank   AJ417449
Plasmid name   Shuttle integration vector pPL2 Incompatibility group   Col440I
Plasmid size   6116 bp Coordinate of oriT [Strand]   
Host baterium   Shuttle integration vector pPL2

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -