Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 300011 |
| Name | oriT_pTAP6  |
| Organism | Cloning vector pTAP6 |
| Sequence Completeness | |
| NCBI accession of oriT (coordinates [strand]) | HM536627 (_) |
| oriT length | 246 nt |
| IRs (inverted repeats) | |
| Location of nic site | |
| Conserved sequence flanking the nic site |
|
| Note | oriT_RP4 |
oriT sequence
Download Length: 246 nt
>oriT_pTAP6
CCGGCCAGCCTCGCAGAGCAGGATTCCCGTTGAGCACCGCCAGGTGCGAATAAGGGACAGTGAAGAAGGAACACCCGCTCGCGGGTGGGCCTACTTCACCTATCCTGCCCGGCTGACGCCGTTGGATACACCAAGGAAAGTCTACACGAACCCTTTGGCAAAATCCTGTATATCGTGCGAAAAAGGATGGATATACCGAAAAAATCGCTATAATGACCCCGAAGCAGGGTTATGCAGCGGAAAAGC
CCGGCCAGCCTCGCAGAGCAGGATTCCCGTTGAGCACCGCCAGGTGCGAATAAGGGACAGTGAAGAAGGAACACCCGCTCGCGGGTGGGCCTACTTCACCTATCCTGCCCGGCTGACGCCGTTGGATACACCAAGGAAAGTCTACACGAACCCTTTGGCAAAATCCTGTATATCGTGCGAAAAAGGATGGATATACCGAAAAAATCGCTATAATGACCCCGAAGCAGGGTTATGCAGCGGAAAAGC
Visualization of oriT structure (The oriT was characterized experimentally)
oriT secondary structure
Predicted by RNAfold.
Download structure file
Reference
[1] Dodsworth JA et al. (2010) Interdomain conjugal transfer of DNA from bacteria to archaea. Appl Environ Microbiol. 76(16):5644-7. [PMID:20581182]
Host bacterium
| ID | 224 | GenBank | HM536627 |
| Plasmid name | Cloning vector pTAP6 | Incompatibility group | ColRNAI |
| Plasmid size | 6479 bp | Coordinate of oriT [Strand] | |
| Host baterium | Cloning vector pTAP6 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |