Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 300010 |
| Name | oriT_pEX18Tp-pheS  |
| Organism | Suicide vector pEX18Tp-pheS |
| Sequence Completeness | |
| NCBI accession of oriT (coordinates [strand]) | EU334848 (_) |
| oriT length | 242 nt |
| IRs (inverted repeats) | |
| Location of nic site | |
| Conserved sequence flanking the nic site |
|
| Note | oriT_RP4 |
oriT sequence
Download Length: 242 nt
>oriT_pEX18Tp-pheS
CGGCCAGCCTCGCAGAGCAGGATTCCCGTTGAGCACCGCCAGGTGCGAATAAGGGACAGTGAAGAAGGAACACCCGCTCGCGGGTGGGCCTACTTCACCTATCCTGCCCGGCTGACGCCGTTGGATACACCAAGGAAAGTCTACACGAACCCTTTGGCAAAATCCTGTATATCGTGCGAAAAAGGATGGATATACCGAAAAAATCGCTATAATGACCCCGAAGCAGGGTTATGCAGCGGAAA
CGGCCAGCCTCGCAGAGCAGGATTCCCGTTGAGCACCGCCAGGTGCGAATAAGGGACAGTGAAGAAGGAACACCCGCTCGCGGGTGGGCCTACTTCACCTATCCTGCCCGGCTGACGCCGTTGGATACACCAAGGAAAGTCTACACGAACCCTTTGGCAAAATCCTGTATATCGTGCGAAAAAGGATGGATATACCGAAAAAATCGCTATAATGACCCCGAAGCAGGGTTATGCAGCGGAAA
Visualization of oriT structure (The oriT was characterized experimentally)
oriT secondary structure
Predicted by RNAfold.
Download structure file
Reference
[1] Barrett AR et al. (2008) Genetic tools for allelic replacement in Burkholderia species. Appl Environ Microbiol. 74(14):4498-508. [PMID:18502918]
Host bacterium
| ID | 223 | GenBank | EU334848 |
| Plasmid name | Suicide vector pEX18Tp-pheS | Incompatibility group | ColRNAI |
| Plasmid size | 4490 bp | Coordinate of oriT [Strand] | |
| Host baterium | Suicide vector pEX18Tp-pheS |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |