Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 200562
• Name: oriT_IME_Sga2069_rpmE
• Organism: Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NC_015215 (3259..3299 [-], 41 nt)
• oriT length: 41 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 41 nt

>oriT_IME_Sga2069_rpmE
CACTTTTACGAAGTAAAGCGTAGTGCGTTACACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_SGGBAA2069_RS03855_IME_Sga2069_rpmE

• ID: 14591
• GenBank: WP_013642911
• Name: mobV_SGGBAA2069_RS03855_IME_Sga2069_rpmE
• UniProt ID: _
• Length: 418 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 418 a.a.
• Molecular weight: 48960.50 Da
• Isoelectric Point: 9.9142

>WP_013642911.1 MobV family relaxase [Streptococcus gallolyticus]
MSYVVARMEKYKSNQLSGIYNHNERVFKNHSNKDIDPSRSHLNYELTNRDKTQTYHKQIKEHINENRISS
RGIRKDAVLCNEWVITSDKTFFESLDQEQTKKFFESAKNYFAEKYGEANIAYASVHLDESTPHMHLGIVP
MKDGKLSSKALFGNREKLREIQDELPKYLNEQGYNLQRGEVDSKKKHLKTEEFKEKQKILKKADEAINKK
NCEINNAKNQLNNLQNDIDSKKQALSELENKEWETVGTLERYEKEIKELSNLKIDLTELDNFNLDNLQKN
NLIKRTFDGKLKMDKETFEKLYHTAKKNISDNTKLKQELNKLQSENNQLSRNLLSYRKTSDENLTLKQEN
RQLKDKVKNLDSQVTLLNKKVAIWREKAKEFMPKPVFQNTLSLVNSLSPIGLAKTVVRQVKNLVDKNS

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-195)

Protein structure

No available structure.

Host bacterium

• ID: 501
• Element type: IME (Integrative mobilizable element)
• Element name: IME_Sga2069_rpmE
• GenBank: NC_015215
• Element size: 2356444 bp
• Coordinate of oriT [Strand]: 3259..3299 [-]
• Host bacterium: Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069
• Coordinate of element: 737512..746070

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: AcrIIA21