Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   200560
Name   oriT_IME_LspYL32_NS_1 in_silico
Organism   Lachnoclostridium sp. YL32
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   CP015399 (136..170 [+], 35 nt)
oriT length   35 nt
IRs (inverted repeats)      5..11, 15..21  (ACTTTGC..GCAAAGT)
Location of nic site      29..30
Conserved sequence flanking the
  nic site    		  GTGTGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 35 nt

>oriT_IME_LspYL32_NS_1
CACGACTTTGCGGAGCAAAGTGTAGTGTGTTATAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14589 GenBank   ANU46859
Name   Mob_Pre_A4V08_14585_IME_LspYL32_NS_1 insolico UniProt ID   _
Length   314 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 314 a.a.        Molecular weight: 36383.80 Da        Isoelectric Point: 10.3227

>ANU46859.1 plasmid recombination enzyme [Lachnoclostridium sp. YL32]
MAQHAILRFEKHKGHPAGPLEAHHERKKEQYASNPDIDTSRSKYNFHIVKPDGRYYHFIQSRIEQARCRT
RKDSTRFVDTLITASPEFFKGKSPKEIAAYFQRAADFLIDRVGRENIVSAMVHMDEKTPHLHLVFVPLTK
DNRLCAKEIIGNRANLTKWQDDFHACMVEQYPDLERGESASKTGRKHIPTRLFKQAVNLSKQARAIEAVL
SGITPLNAGKKKEEALSMLKKWFPQMENFSGQLKKYKVTINDLLAENEKLEVRAKASEKGKMNDTMERAK
LKSELDDMRRLVDRIPPEILAELKRQQRQHGKER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure



No available structure.




Host bacterium

ID   499 Element type   IME (Integrative mobilizable element)
Element name   IME_LspYL32_NS_1 GenBank   CP015399
Element size   7225339 bp Coordinate of oriT [Strand]   136..170 [+]
Host bacterium   Lachnoclostridium sp. YL32 Coordinate of element   3171611..3179237

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21