Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   200546
Name   oriT_Tn6215 in_silico
Organism   [Clostridium] difficile strain CD80
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   KC166248 (12809..12843 [-], 35 nt)
oriT length   35 nt
IRs (inverted repeats)      5..11, 15..21  (ACTTTGC..GCAAAGT)
Location of nic site      29..30
Conserved sequence flanking the
  nic site    		  GTGTGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 35 nt

>oriT_Tn6215
CACGACTTTGCGAAGCAAAGTGTAGTGTGTTATAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14583 GenBank   AGM38217
Name   Mob_Pre_Tn6215_03_Tn6215 insolico UniProt ID   _
Length   312 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 312 a.a.        Molecular weight: 36105.36 Da        Isoelectric Point: 10.5026

>AGM38217.1 putative plasmid recombination enzyme [Clostridioides difficile]
MAQHAILRFEKHKGNPARPLEAHHERQKEQYASNPDIDTSRSKYNFHIVKPEGRYYHFIQSRIEQAGCRT
RKDSTRFVDTLVTASPEFFKGKSPKEIQAFFQRAADFLIGRVGRENIVSAVVHMDEKTPHLHLTFVPLTK
DNRLCAKEIIGNRANLTKWQDDFHAYMVEKYPDLERGESASRTGRKHIPTRLFKQAVSLSRQARAIEATL
DGINPLNAGKKKEEALSMLKKWFPQMENFSGQLKKYKVTINDLLAENEKLEARAKASEKGKMKDTMERAK
LKSELDNLQRLVDRIPPEVLAELKRQQRTRGR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure



No available structure.




Host bacterium

ID   488 Element type   IME (Integrative mobilizable element)
Element name   Tn6215 GenBank   KC166248
Element size   13008 bp Coordinate of oriT [Strand]   12809..12843 [-]
Host bacterium   [Clostridium] difficile strain CD80 Coordinate of element   1..13008

Cargo genes

Drug resistance gene   erm(B)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21