Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 200524 |
| Name | oriT_MGIVchMoz6  |
| Organism | Vibrio cholerae strain 16AMOZ |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | KC117175 (5288..5567 [-], 280 nt) |
| oriT length | 280 nt |
| IRs (inverted repeats) | 234..239, 251..256 (GCCAAA..TTTGGC) 74..79, 90..95 (ATCAAA..TTTGAT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 280 nt
>oriT_MGIVchMoz6
GCTGTTTGGCTGTGTTCGCCAAGTGCAAAAAAATCGAGACGCCAAACGATCGTTTGCATTCTGGATTTAAAAAATCAAACGGTTTGTACTTTGATGCCGAGGTTGGTTTAGGGGGCAAAAAGTGCCAAACCTTGCTTTGAGCCAGTACTGGCAAGGCCTACCAGCGTTGGATTTCAATCGAGACGCCAAACAGTAAATGGGCTAATTTCCCTGTTTGGCGTTTCGATCCAAAAGCCAAACGGATAGTGGTTTTGGCGTAAGGGGGTAAAGGCATGGGGAA
GCTGTTTGGCTGTGTTCGCCAAGTGCAAAAAAATCGAGACGCCAAACGATCGTTTGCATTCTGGATTTAAAAAATCAAACGGTTTGTACTTTGATGCCGAGGTTGGTTTAGGGGGCAAAAAGTGCCAAACCTTGCTTTGAGCCAGTACTGGCAAGGCCTACCAGCGTTGGATTTCAATCGAGACGCCAAACAGTAAATGGGCTAATTTCCCTGTTTGGCGTTTCGATCCAAAAGCCAAACGGATAGTGGTTTTGGCGTAAGGGGGTAAAGGCATGGGGAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 466 | Element type | IME (Integrative mobilizable element) |
| Element name | MGIVchMoz6 | GenBank | KC117175 |
| Element size | 18824 bp | Coordinate of oriT [Strand] | 5288..5567 [-] |
| Host bacterium | Vibrio cholerae strain 16AMOZ | Coordinate of element | 1..18824 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |