Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   200492
Name   oriT_ICE_SsaN20_rpsI in_silico
Organism   Streptococcus salivarius integrative and
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   LT622836 (24620..24768 [+], 149 nt)
oriT length   149 nt
IRs (inverted repeats)      111..116, 124..129  (CACTTT..AAAGTG)
 102..107, 111..116  (AAAGTG..CACTTT)
 9..15, 28..34  (AACCCCC..GGGGGTT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 149 nt

>oriT_ICE_SsaN20_rpsI
GAGACTTCAACCCCCGATTTCTAATAGGGGGGTTACATTTGGCCAAAGTGCCACGTCCACCCCTCCTCATTCCTTGTGGGAGTTGGGATTTCAAGATTTAGAAAGTGTGTCACTTTGGTCCAAAAAGTGTGTCACTTAATTAAAAGGAG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14533 GenBank   SCW20978
Name   ORFJ_-_ICE_SsaN20_rpsI insolico UniProt ID   _
Length   410 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 410 a.a.        Molecular weight: 48342.82 Da        Isoelectric Point: 6.5075

>SCW20978.1 Putative relaxase [Streptococcus salivarius]
MTKMSPFQIKNFRKQTGLSQKSFAQAVNLPIRTYRSYESGERGLTIDKFRELKEKLGYYQECHKNNLRAH
IDYLRLTFPSLRDLEAFCENFLFCHLSEFTDQETRLMNYTHLWQRGNIWIFDFFDKSATNNYQTCLQLSG
QGCREMELLLEHKGISWQTFLQNILYAYQDVRVKRLDIALDELYKGYGHEDEHIQIPKLIDKLYAKEIVL
DTIRKWNITGGGSFTDNEDMEANHGLSLYFGSRQSQLYFNFYEKRYEIARMENISLEESLEIFGIWNRYE
LRFSDQKAQGAVEEYINGVDLGEIARGIVNKEIQVYDGLTRFGAYKPDEKWQRLFGGVDPLKLSTSPQPY
SIERTIRWLTYQVANSLALVSEADKIMQTEYMKMIQNSGEITDRGEAILRLLKTNKHYEH

  Protein domains


Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(9-57)

Replication initiation factor (Rep_trans)

(172-384)

Rolling Circle replication initiation protein N-terminal domain (Rol_Rep_N)

(69-162)


  Protein structure



No available structure.




T4CP

ID   17149 GenBank   SCW20977
Name   ORFK_-_ICE_SsaN20_rpsI insolico UniProt ID   _
Length   562 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 562 a.a.        Molecular weight: 65058.26 Da        Isoelectric Point: 6.8315

>SCW20977.1 FtsK/SpoIIIE family coupling protein [Streptococcus salivarius]
MKLFTYRGIRVRAFYRHIRGITWFIWWFPSLLAIGNYCYVNLEELKDHPLPQVYFIGGVLVASCLVAYLL
NRMCYEKIVFFQKLNSLRILSRFLIENNLYLIKNIRRENKTIEKIVLPQVYLKQSRYKIEVRFILEGNKF
QDRFLNLGSTLEVMFNGDFRNKTFDKRFITYDIAINRIDSRITINEVEVKGSKLQLMKDITWDYIEEPHL
LIGGGTGGGKTVVLMTIIYALAKIGFVDICDPKNSDLAGLKKIPVFHGRVYTSKEDIIQCFKENVTFMEK
RYELMSTSPKFQAGKNFTHYDMTPKFILVDEWAALMAKIDRDYSLQSELMEYLSQLVLEGRQAGVFIIFA
MQRPDGEFIKTALRDNFMKRLSVGHLESTGYDMMFGDANKTKEFKKLDEINGIKVKGRGYIANNGDLAGE
FFSPYVPLDKGFSFYDAYAKIPIMEFNGEEFEVFGEGHQQPEPIEPIEEEKAPNTDTNLRPLKEFAEEQD
LKMATLRKIIYLLQEQGIVFERTESAILVDPFQEELLLESLIHFEEGGRKSYPRAVEATLSHHGLGQGQG
QA

  Protein domains


Predicted by InterproScan.

FtsK/SpoIIIE family (FtsK_SpoIIIE)

(200-287)

  Protein structure



No available structure.




Host bacterium

ID   437 Element type   ICE (Integrative and conjugative element)
Element name   ICE_SsaN20_rpsI GenBank   LT622836
Element size   37356 bp Coordinate of oriT [Strand]   24620..24768 [+]
Host bacterium   Streptococcus salivarius integrative and Coordinate of element   1..37356

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   cadX
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -