Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   200485
Name   oriT_ICE_SsaF1-8_rpmG in_silico
Organism   Streptococcus salivarius integrative and
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   LT622828 (14114..14262 [+], 149 nt)
oriT length   149 nt
IRs (inverted repeats)      111..116, 124..129  (CACTTT..AAAGTG)
 102..107, 111..116  (AAAGTG..CACTTT)
 9..15, 28..34  (AACCCCC..GGGGGTT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 149 nt

>oriT_ICE_SsaF1-8_rpmG
GAAACTTCAACCCCCGATTTCTAATAGGGGGGTTACATTTGGCCAAAGTGCCACGTCCACCCCTCCTCATTCCTTGTGGGAGTTGGGATTTCAAGATTTAGAAAGTGTGTCACTTTGGTCCAAAAAGTGTGTCACTTAGTCAAAAGGAG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14526 GenBank   SCW20716
Name   ORFJ_-_ICE_SsaF1-8_rpmG insolico UniProt ID   _
Length   410 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 410 a.a.        Molecular weight: 48375.00 Da        Isoelectric Point: 6.5065

>SCW20716.1 ORFJ [Streptococcus salivarius]
MTKMSPLQIKNFRKQTGLSQKSFAQAVNLPIRTYRSYESGERGLTIDKFRELKEKLGYYQECHKNNLRAH
IDYLRLTFPSIRDLEAFCENFLFCHLCEFTDQETRLMNYTHLWQRGNIWIFDFFDKSATNNYQTCLQLSG
QGCREMELLLEHKGISWQTFLQTILYAYEDVRVKRLDIALDEIYKGYGHEEEHIQIPKLIDKLYAKEIVL
DTIKKWNITGGGSFTDNEDMEANHGLSLYFGSRQSQLYFNFYEKRYEIARMENISLEESLEIFGIWNRYE
LRFSDQKAQGVVEEYINGVDLGEIARGIVNKEIQVYDGVTRFGAYKPYEKWQRLFGGVEPLKLSTSPQPY
SIERTIRWLTYQVANSLALVSEADKIMQTEYMKMIQNSGEITDRGEAILRLLKTNKHYEH

  Protein domains


Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(9-57)

Rolling Circle replication initiation protein N-terminal domain (Rol_Rep_N)

(69-162)

Replication initiation factor (Rep_trans)

(172-384)


  Protein structure



No available structure.




T4CP

ID   17142 GenBank   SCW20715
Name   ORFK_-_ICE_SsaF1-8_rpmG insolico UniProt ID   _
Length   562 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 562 a.a.        Molecular weight: 65147.31 Da        Isoelectric Point: 6.2186

>SCW20715.1 FtsK/SpoIIIE family coupling protein [Streptococcus salivarius]
MKLFTYRGIRVRAFYRHIRGITWFIWWFPSLLAIGNYCYLNLEELKDHPLPLGYFIGGVLVASCLVAHLL
NRMCYEKIVFFQKLNSLRILSRFLIENNLYLIKNIRRENKTIEKIVLPQVYLKQSRYKIEVRFILEGNKF
QDRFLNLGSTLEVMFNGDFRNKTFDKRFITYDIAINRIDSRITINEVEVKGSKLQLMTDVTWDYIEEPHL
LIGGGTGGGKTVVLMTIIYALAKIGFVDICDPKNSDLAGLKKIPVFHGRVYISKEDIIQCFKENVAFMEK
RYELMSTSPKFQAGKNFTYYGMTPKFILVDEWAALMAKIDRDYNLQSELMEYLSQLVLEGRQAGVFIIFA
MQRPDGEFIKTALRDNFMKRLSVGHLESTGYDMMFGDANKTKEFKKLDEINGVKVKGRGYIANNGDLAGE
FFSPYVPLDQGFSFYDAYSKIPIMEFNGEEFEVFGEEHQQSEPIEPIEEEEAPNTETNRRPLKEFAEEQD
LKMATLRKIIYLLQEQGIIFERTESAILVDLFQEELLLEILIHFEEEGRKSYPKAVEATLSHHGLGQGQG
QA

  Protein domains


Predicted by InterproScan.

FtsK/SpoIIIE family (FtsK_SpoIIIE)

(200-287)

  Protein structure



No available structure.




Host bacterium

ID   430 Element type   ICE (Integrative and conjugative element)
Element name   ICE_SsaF1-8_rpmG GenBank   LT622828
Element size   27272 bp Coordinate of oriT [Strand]   14114..14262 [+]
Host bacterium   Streptococcus salivarius integrative and Coordinate of element   1..27272

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -