Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   200481
Name   oriT_ICE_18RS21_rplL in_silico
Organism   Streptococcus agalactiae 18RS21 s_agalactiae_18rs21_3013
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   AAJO01000013 (15501..15541 [-], 41 nt)
oriT length   41 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 41 nt

>oriT_ICE_18RS21_rplL
CACATTTACGAAGTAAAGTATAATGGGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14521 GenBank   EAO63139
Name   Relaxase_SAJ_1272_ICE_18RS21_rplL insolico UniProt ID   _
Length   621 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 621 a.a.        Molecular weight: 74154.75 Da        Isoelectric Point: 7.3028

>EAO63139.1 Tn5252, relaxase [Streptococcus agalactiae 18RS21]
MVITKHYAVHGKKYRRQLIKYILDPKKTRNLSLISDFGMSNYLDFPDYVELVKMYQNNFLSNDQLYDSRF
DRQEKKQQKIHAHHIIQSFSPEDKLSPEEINRIGYETIKELIGGQYKFIVATHVDQDHCHNHIIINSINS
QSQKKLKWDYALERNLQMISDRISKVAGAKIIPPKRYSHRDYEVYRRSNHKYELKQRLFFLMEHSIDFND
FMQKAEQLNVKIDFSRKHSRFFMTDRNMKQVIQGDKLNKREPYSKEYFQRYFAKKKIELILEFLLLRSNS
FDDLVEKARLLGLELKSKKKTIDFVLSDGKSCISIPNKSLRKKNLYDTTYFDSYFKEHDVFEVLHNNEVK
IEFEKFETQQLSEILTVEEITEAYETYKTKRDAVHEFEVEITEEQIEKIVLDGLFVKVWMGIGQEGLIFI
PNHQLNILEQENKKQYQVFIRETSSYFIYHKEDSEMNRFMKGRDLIRQLTFDNKSLPYKRRISLVSLQQK
IEEINLLMTLNIQNKSFLELKDELVGDIAQLDIELTNLQDKNTTLNKMAEVVVNLQSDNQDTKQLAKYEC
SKMNLSQNVTIGQIESEIEMIQNQLDNKIEEYENAVRKLDEYVRVLNMDKYKTDDFSIHIE

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(11-263)

Lantibiotic streptin immunity protein (Relaxase_C)

(518-610)


  Protein structure



No available structure.




Host bacterium

ID   426 Element type   ICE (Integrative and conjugative element)
Element name   ICE_18RS21_rplL GenBank   AAJO01000013
Element size   25513 bp Coordinate of oriT [Strand]   15501..15541 [-]
Host bacterium   Streptococcus agalactiae 18RS21 s_agalactiae_18rs21_3013 Coordinate of element   4097..25513

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   cadC
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -