Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 200474 |
| Name | oriT_ICEBxeLB400-1  |
| Organism | Paraburkholderia xenovorans LB400 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | CP000270 (52372..52611 [-], 240 nt) |
| oriT length | 240 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 240 nt
>oriT_ICEBxeLB400-1
TGTGGGTGTCCTAGTGGCGGGCCGACCGGGAGGCCTTTTGCCTTTTCGAGGTAGGGCCTTTCCCCTTGCAGCCCCTTCCATTGCCCTTTCGGCCCTTTGGCCTTTAACCATTTGGATATAGGGCGGCGTGCGCTTGCCGTCCACCACCAATGCGGGTTGCAGCGAGCCGGATTGGTGCGTGAAGGCTCGCTGTTCCCCCCCATACGATGGCCCGATTCTTGGACTCTGGAGAGCATCATG
TGTGGGTGTCCTAGTGGCGGGCCGACCGGGAGGCCTTTTGCCTTTTCGAGGTAGGGCCTTTCCCCTTGCAGCCCCTTCCATTGCCCTTTCGGCCCTTTGGCCTTTAACCATTTGGATATAGGGCGGCGTGCGCTTGCCGTCCACCACCAATGCGGGTTGCAGCGAGCCGGATTGGTGCGTGAAGGCTCGCTGTTCCCCCCCATACGATGGCCCGATTCTTGGACTCTGGAGAGCATCATG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 14511 | GenBank | ABE31780 |
| Name | TraI_2_Bxe_A1173_ICEBxeLB400-1 |
UniProt ID | _ |
| Length | 615 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 615 a.a. Molecular weight: 67419.64 Da Isoelectric Point: 7.4238
>ABE31780.1 Conserved hypothetical protein [Paraburkholderia xenovorans LB400]
MLSLFQRKRPVVASAPSPAPSNDLPKGRLRPESAASLLATPRRQKLLEHIWQRTSLSRKQFATLYRAPLE
RYAELVQRFPASEAHHHAYPGGMLDHGLEIVAYALKLRQSHLLPAGSTPEDQAAQSEAWTAAVAYAALLH
DVGKLAVDLHVELADGSTWHPWHGPLRQPYRFRYREDREYRLHSAATGLLYRQLLDAQLLDWLSGYPALW
GPLLYVLAGQYEHAGVLGELVVQADRASVAQELGGDPARAMAAPKHALQRKLLDGLRYLLKEELKLNQPE
ASDGWLTEDALWLVSKTVSDKLRAHLLSQGIDGIPANNTAVFNVLQDHGMLHPTTDGKAVWRATVTSATG
WSHSFTLLRLAPALIWEPGERPVPFAGTVAIDAVPNDKSVAQPAAVAETTQEGQEAPPWESSSVAVPSPA
TQTVPDVLEDMLAMVGMGNSSGTQQDEEATSHAADATPSEAPMPAMAAASPPSPVPPAAPSSATAQPSGE
HFMAWLKQGIVSRRLIINDAKALVHTVSDTAYLVSPGVFQRYAREHPQVGMLAKQESQQDWQWVQKRFEK
LQLHRKHINGLNVWACSVTGSRKSRQLHGYLLRDPLPLFGKVPPNNPYLSILQSI
MLSLFQRKRPVVASAPSPAPSNDLPKGRLRPESAASLLATPRRQKLLEHIWQRTSLSRKQFATLYRAPLE
RYAELVQRFPASEAHHHAYPGGMLDHGLEIVAYALKLRQSHLLPAGSTPEDQAAQSEAWTAAVAYAALLH
DVGKLAVDLHVELADGSTWHPWHGPLRQPYRFRYREDREYRLHSAATGLLYRQLLDAQLLDWLSGYPALW
GPLLYVLAGQYEHAGVLGELVVQADRASVAQELGGDPARAMAAPKHALQRKLLDGLRYLLKEELKLNQPE
ASDGWLTEDALWLVSKTVSDKLRAHLLSQGIDGIPANNTAVFNVLQDHGMLHPTTDGKAVWRATVTSATG
WSHSFTLLRLAPALIWEPGERPVPFAGTVAIDAVPNDKSVAQPAAVAETTQEGQEAPPWESSSVAVPSPA
TQTVPDVLEDMLAMVGMGNSSGTQQDEEATSHAADATPSEAPMPAMAAASPPSPVPPAAPSSATAQPSGE
HFMAWLKQGIVSRRLIINDAKALVHTVSDTAYLVSPGVFQRYAREHPQVGMLAKQESQQDWQWVQKRFEK
LQLHRKHINGLNVWACSVTGSRKSRQLHGYLLRDPLPLFGKVPPNNPYLSILQSI
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 17127 | GenBank | ABE31758 |
| Name | t4cp2_Bxe_A1195_ICEBxeLB400-1 |
UniProt ID | _ |
| Length | 728 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 728 a.a. Molecular weight: 80862.63 Da Isoelectric Point: 7.6092
>ABE31758.1 hypothetical protein Bxe_A1195 [Paraburkholderia xenovorans LB400]
MSGKQPVEVLLRPAVELYTVAACAGAAFLSLVAPWSLALSPAMGVGSALAFGAYGAIRYRDARVILRYRR
NIRRLPRYVMTSKDVPVSQQRLFVGRGFLWEQKHTHRLMQTYRPEFRRYVEPTPAYRLTRRLEERLEFAR
FPLSRLPKLTGWDVPFNPVRPLPPVGGLPRLHGIEPEEVDVSLPLGERVGHSLVLGTTRVGKTRLAELFV
TQDIRRKNAAGEHEVVIVIDPKGDADLLKRMYVEAQRAGREGEFYVFHLGWPDISARYNAVGRFGRISEV
ATRIAGQLSGEGNSAAFREFAWRFVNIIARALVELGQRPDYMLIQRHVINIDALFIEYAQHYFAKTEPKA
WEVIVQIEAKLNEKNIPRNMIGREKRVVALEQYLSQARNYDPVLDGLRSAVRYDKTYFDKIVASLLPLLE
KLTSGKIAQLLAPNYSDLADPRPIFDWMQVIRKRAIVYVGLDALSDAEVAAAVGNSMFSDLVSVAGHIYK
HGIDDGLPGASAGARVPINVHADEFNELMGDEFIPLINKGGGAGLQVTAYTQTLSDIEARIGNRAKAGQV
IGNFNNLFMLRVRETATAELLTRQLPKVEVYTTTIVSGATDSSDIRGATDFTSNTQDRISMSSVPMIEPS
HIVGLPKGQCFALLQGGQLWKVRMPLPAPDPDEVMPQDLQQLAGYMRQSYSEATQWWEFTSSPALQDGAL
PDDLLDDAAAVEPGLVATDDSAGNEASP
MSGKQPVEVLLRPAVELYTVAACAGAAFLSLVAPWSLALSPAMGVGSALAFGAYGAIRYRDARVILRYRR
NIRRLPRYVMTSKDVPVSQQRLFVGRGFLWEQKHTHRLMQTYRPEFRRYVEPTPAYRLTRRLEERLEFAR
FPLSRLPKLTGWDVPFNPVRPLPPVGGLPRLHGIEPEEVDVSLPLGERVGHSLVLGTTRVGKTRLAELFV
TQDIRRKNAAGEHEVVIVIDPKGDADLLKRMYVEAQRAGREGEFYVFHLGWPDISARYNAVGRFGRISEV
ATRIAGQLSGEGNSAAFREFAWRFVNIIARALVELGQRPDYMLIQRHVINIDALFIEYAQHYFAKTEPKA
WEVIVQIEAKLNEKNIPRNMIGREKRVVALEQYLSQARNYDPVLDGLRSAVRYDKTYFDKIVASLLPLLE
KLTSGKIAQLLAPNYSDLADPRPIFDWMQVIRKRAIVYVGLDALSDAEVAAAVGNSMFSDLVSVAGHIYK
HGIDDGLPGASAGARVPINVHADEFNELMGDEFIPLINKGGGAGLQVTAYTQTLSDIEARIGNRAKAGQV
IGNFNNLFMLRVRETATAELLTRQLPKVEVYTTTIVSGATDSSDIRGATDFTSNTQDRISMSSVPMIEPS
HIVGLPKGQCFALLQGGQLWKVRMPLPAPDPDEVMPQDLQQLAGYMRQSYSEATQWWEFTSSPALQDGAL
PDDLLDDAAAVEPGLVATDDSAGNEASP
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4SS
T4SS were predicted by using oriTfinder2.
Region 1: 3589842..3610530
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Bxe_A1203 | 3585210..3586319 | + | 1110 | ABE31750 | Conserved hypothetical, plasmid-related protein | - |
| Bxe_A1202 | 3586392..3588698 | + | 2307 | ABE31751 | Putative, plasmid-related, DNA/RNA helicase | - |
| Bxe_A1201 | 3588812..3589681 | + | 870 | ABE31752 | hypothetical protein | - |
| Bxe_A1200 | 3589842..3590441 | + | 600 | ABE31753 | Conserved hypothetical protein | tfc2 |
| Bxe_A1199 | 3590438..3591088 | + | 651 | ABE31754 | hypothetical protein | - |
| Bxe_A1198 | 3591103..3591822 | + | 720 | ABE31755 | Conserved hypothetical protein | tfc3 |
| Bxe_A1197 | 3591804..3592394 | + | 591 | ABE31756 | Conserved hypothetical protein | virB1 |
| Bxe_A1196 | 3592391..3592939 | + | 549 | ABE31757 | Conserved hypothetical protein | tfc5 |
| Bxe_A1195 | 3592944..3595130 | + | 2187 | ABE31758 | hypothetical protein | - |
| Bxe_A1194 | 3595127..3595876 | + | 750 | ABE31759 | Conserved hypothetical protein | tfc7 |
| Bxe_A1193 | 3595913..3596317 | - | 405 | ABE31760 | hypothetical protein | - |
| Bxe_A1192 | 3596503..3596886 | + | 384 | ABE31761 | Plasmid conserved hypothetical protein, RAQPRD | tfc8 |
| Bxe_A1191 | 3596883..3597116 | + | 234 | ABE31762 | hypothetical protein | tfc9 |
| Bxe_A1190 | 3597127..3597492 | + | 366 | ABE31763 | Conserved hypothetical protein | tfc10 |
| Bxe_A1189 | 3597505..3597915 | + | 411 | ABE31764 | Conserved hypothetical protein | tfc11 |
| Bxe_A1188 | 3597912..3598604 | + | 693 | ABE31765 | Conserved hypothetical protein | tfc12 |
| Bxe_A1187 | 3598601..3599533 | + | 933 | ABE31766 | Conserved hypothetical protein | tfc13 |
| Bxe_A1186 | 3599523..3600941 | + | 1419 | ABE31767 | Conserved hypothetical protein | tfc14 |
| Bxe_A1185 | 3600922..3601362 | + | 441 | ABE31768 | Conserved hypothetical protein | tfc15 |
| Bxe_A1184 | 3601362..3604229 | + | 2868 | ABE31769 | Conserved hypothetical protein | virb4 |
| Bxe_A1183 | 3604243..3605007 | + | 765 | ABE31770 | Conserved hypothetical protein | - |
| Bxe_A1182 | 3605191..3605685 | + | 495 | ABE31771 | DNA repair protein RadC | - |
| Bxe_A1181 | 3605844..3606290 | + | 447 | ABE31772 | Conserved hypothetical protein | tfc24 |
| Bxe_A1180 | 3606287..3607234 | + | 948 | ABE31773 | Conserved hypothetical protein | tfc23 |
| Bxe_A1179 | 3607244..3608641 | + | 1398 | ABE31774 | Conserved hypothetical protein | tfc22 |
| Bxe_A1178 | 3608638..3608997 | + | 360 | ABE31775 | hypothetical protein | tfc18 |
| Bxe_A1177 | 3609013..3610530 | + | 1518 | ABE31776 | Conserved hypothetical protein | tfc19 |
| Bxe_A1176 | 3610544..3610921 | - | 378 | ABE31777 | hypothetical protein | - |
| Bxe_A1175 | 3610949..3611407 | - | 459 | ABE31778 | Conserved hypothetical protein | - |
| Bxe_A1174 | 3611407..3611793 | - | 387 | ABE31779 | transcriptional regulator, AbrB family | - |
| Bxe_A1173 | 3612030..3613877 | + | 1848 | ABE31780 | Conserved hypothetical protein | - |
| Bxe_A1171 | 3614392..3615198 | - | 807 | ABE31781 | transcriptional regulator, AraC family | - |
Host bacterium
| ID | 419 | Element type | ICE (Integrative and conjugative element) |
| Element name | ICEBxeLB400-1 | GenBank | CP000270 |
| Element size | 4895836 bp | Coordinate of oriT [Strand] | 52372..52611 [-] |
| Host bacterium | Paraburkholderia xenovorans LB400 | Coordinate of element | 3559420..3682252 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | bphA1 |
| Symbiosis gene | - |
| Anti-CRISPR | - |