Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 200448 |
| Name | oriT_ICEAxyA8-1  |
| Organism | Achromobacter xylosoxidans A8 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | CP002287 (57136..57603 [-], 468 nt) |
| oriT length | 468 nt |
| IRs (inverted repeats) | 137..145, 152..160 (GATGCGGCC..GGCCGCATC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 468 nt
>oriT_ICEAxyA8-1
AGCCGGGAAAGCCTGGACCAGCTCGGCGTAGCGTTCCAGTGGCGCCCGGTACAAGGTGGCGAACTGCTTACGTGAGAGCGACGTGCGCTGCCAGATGTGCTCCAGCAGCTTCTGCCGGCGCGGGGTGGCCAGCAGCGATGCGGCCGACTCGGGCCGCATCAACCCTTTCGGGAGGTCGGTGACCGATGGTGGCGTCGGAGCAGCAGCAACCGCGGGCCGTTTTCGCTGGAACAGAGAGAGCATGCGGGTGTCCTGTCGCGGGCCGAGCGGGGAGGCCTTTTTGCCTTTTCGGGATAGAGCCTTTCCCCTTGCACCCCATTCCCTTGCCATTTCGACCCTTTACAGCCTTTGGGTATAGGGCGACGGGTGCTGACCGTCCACCGCCAATGCGGGTTGCAGCAGGGCCGGATTGATGCAGGAAGGCTGGCTGTTCACGCCCTACGATGGGCCGATTCTTGGACTCGGAGA
AGCCGGGAAAGCCTGGACCAGCTCGGCGTAGCGTTCCAGTGGCGCCCGGTACAAGGTGGCGAACTGCTTACGTGAGAGCGACGTGCGCTGCCAGATGTGCTCCAGCAGCTTCTGCCGGCGCGGGGTGGCCAGCAGCGATGCGGCCGACTCGGGCCGCATCAACCCTTTCGGGAGGTCGGTGACCGATGGTGGCGTCGGAGCAGCAGCAACCGCGGGCCGTTTTCGCTGGAACAGAGAGAGCATGCGGGTGTCCTGTCGCGGGCCGAGCGGGGAGGCCTTTTTGCCTTTTCGGGATAGAGCCTTTCCCCTTGCACCCCATTCCCTTGCCATTTCGACCCTTTACAGCCTTTGGGTATAGGGCGACGGGTGCTGACCGTCCACCGCCAATGCGGGTTGCAGCAGGGCCGGATTGATGCAGGAAGGCTGGCTGTTCACGCCCTACGATGGGCCGATTCTTGGACTCGGAGA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 14448 | GenBank | ADP14461 |
| Name | TraI_2_AXYL_01117_ICEAxyA8-1 |
UniProt ID | _ |
| Length | 625 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 625 a.a. Molecular weight: 68562.74 Da Isoelectric Point: 7.2249
>ADP14461.1 hypothetical protein AXYL_01117 [Achromobacter xylosoxidans A8]
MLSLFQRKRPAVAAAPTPPSVTDLPKGLMRPESAASLLATPRRQKLLEHIWQRTSLSRKQFATLYRAPLE
RYAELVQAFPASEAHHHAYPGGMLDHGLEIVAYSLKLRQSHLLPIGASPEDQAAQAEAWTAAVAYAALLH
DIGKIAVDLHVELADGSLWHPWYGPLHQPYRFRYRDDREYHLHSAATGLLYRQLLDTQLLDWLSGYPDLW
GPLLYVLAGQYEHAGVLGELVVQADRASVAQELGGDPARAMAAPKHALQRKLLDGLRYLLKEQLKLNQPE
ASDGWLTEDALWLVSKTVSDKLRAHLLSQGVDGIPANNTAVFNVLQDHGMLQPTPDGKAIWRATVTSSTG
WCHSFTLLRLGPALIWEPSERPALFAGTVAIDAAATDKGPDVSATTPPAGAQSASEGQEVPPWEGGNPSR
PAKGEPLPDAMEDMLSMVGMVNSPATRQDAEAPSEPVSAARTEATTLTAPQRSSPAPKPTTAPSGEHFMA
WLKQGIASRRLIINDAKALVHTASGTAYLVSPGVFQRYAQERPQVSALAKQESQQDWQWIQKRFERLQLH
RKQPNGLNIWTCEVTGPRKSRRLHGYLLEDPSLLFSETPPSNPYLSLLGETRHCEQTSGKQGAST
MLSLFQRKRPAVAAAPTPPSVTDLPKGLMRPESAASLLATPRRQKLLEHIWQRTSLSRKQFATLYRAPLE
RYAELVQAFPASEAHHHAYPGGMLDHGLEIVAYSLKLRQSHLLPIGASPEDQAAQAEAWTAAVAYAALLH
DIGKIAVDLHVELADGSLWHPWYGPLHQPYRFRYRDDREYHLHSAATGLLYRQLLDTQLLDWLSGYPDLW
GPLLYVLAGQYEHAGVLGELVVQADRASVAQELGGDPARAMAAPKHALQRKLLDGLRYLLKEQLKLNQPE
ASDGWLTEDALWLVSKTVSDKLRAHLLSQGVDGIPANNTAVFNVLQDHGMLQPTPDGKAIWRATVTSSTG
WCHSFTLLRLGPALIWEPSERPALFAGTVAIDAAATDKGPDVSATTPPAGAQSASEGQEVPPWEGGNPSR
PAKGEPLPDAMEDMLSMVGMVNSPATRQDAEAPSEPVSAARTEATTLTAPQRSSPAPKPTTAPSGEHFMA
WLKQGIASRRLIINDAKALVHTASGTAYLVSPGVFQRYAQERPQVSALAKQESQQDWQWIQKRFERLQLH
RKQPNGLNIWTCEVTGPRKSRRLHGYLLEDPSLLFSETPPSNPYLSLLGETRHCEQTSGKQGAST
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 17052 | GenBank | ADP14440 |
| Name | t4cp2_AXYL_01096_ICEAxyA8-1 |
UniProt ID | _ |
| Length | 729 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 729 a.a. Molecular weight: 80937.58 Da Isoelectric Point: 6.9414
>ADP14440.1 hypothetical protein AXYL_01096 [Achromobacter xylosoxidans A8]
MSGKQPVEVLLRPAVELYTVAACAGAAFLSLVAPWSLALSPAMGVGAALAFGAYGAIRYRDARVILRYRR
NIRRLPRYVMTSRDVPVSQQRLFVGRGFLWEQKHTHRLMQTYRPEFRRYVEPTPAYRLARRLEERLEFAP
FPLSRLVRLTGWDVSFNPVRPLPPVGGLPRLHGIEPDEVDVSLPLGERVGHSLVLGTTRVGKTRLAELFV
TQDIRRTNADGEHEVVIVIDPKGDADLLKRMYVEAKRAGREGEFYVFHLGWPEFSARYNAVGRFGRISEV
ATRIAGQLSGEGNSAAFREFAWRFVNIIARALVELGQRPDYMLIQRHVINIDALFMEYAQHYFAKTEPKT
WEVIVQIEAKLNEKNIPRNMIGREKRVVALEQYLSQARNYDPVLDGLRSAVRYDKTYFDKIVASLLPLLE
KLTSGKIAQLLAPNYSDLSDARPIFDWMQVIRKRAVVYVGLDALSDAEVAAAVGNSMFSDLVSVAGHIYK
HGIDDGLPGASAGTRIPINVHADEFNELMGDEFIPLINKGGGAGLQVTAYTQTLSDIEARIGNRAKAGQV
IGNFNNLFMLRVRETATAELLTRQLPKVEVYTTTIVSGATDASDIRGTTDFTSNTQDRISMSSVPMIEPS
HVVGLPKGQCFALLQGGQLWKVRMPLPAPDPDEVMPADLQQLAGYMRQSYSEATQWWEFTSSPALQEAAL
PDDLLDDAAPAEPDAVATGADDSTGEAAP
MSGKQPVEVLLRPAVELYTVAACAGAAFLSLVAPWSLALSPAMGVGAALAFGAYGAIRYRDARVILRYRR
NIRRLPRYVMTSRDVPVSQQRLFVGRGFLWEQKHTHRLMQTYRPEFRRYVEPTPAYRLARRLEERLEFAP
FPLSRLVRLTGWDVSFNPVRPLPPVGGLPRLHGIEPDEVDVSLPLGERVGHSLVLGTTRVGKTRLAELFV
TQDIRRTNADGEHEVVIVIDPKGDADLLKRMYVEAKRAGREGEFYVFHLGWPEFSARYNAVGRFGRISEV
ATRIAGQLSGEGNSAAFREFAWRFVNIIARALVELGQRPDYMLIQRHVINIDALFMEYAQHYFAKTEPKT
WEVIVQIEAKLNEKNIPRNMIGREKRVVALEQYLSQARNYDPVLDGLRSAVRYDKTYFDKIVASLLPLLE
KLTSGKIAQLLAPNYSDLSDARPIFDWMQVIRKRAVVYVGLDALSDAEVAAAVGNSMFSDLVSVAGHIYK
HGIDDGLPGASAGTRIPINVHADEFNELMGDEFIPLINKGGGAGLQVTAYTQTLSDIEARIGNRAKAGQV
IGNFNNLFMLRVRETATAELLTRQLPKVEVYTTTIVSGATDASDIRGTTDFTSNTQDRISMSSVPMIEPS
HVVGLPKGQCFALLQGGQLWKVRMPLPAPDPDEVMPADLQQLAGYMRQSYSEATQWWEFTSSPALQEAAL
PDDLLDDAAPAEPDAVATGADDSTGEAAP
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4SS
T4SS were predicted by using oriTfinder2.
Region 1: 1163505..1183635
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AXYL_01086 | 1160278..1161000 | - | 723 | ADP14430 | arsenical resistance protein ArsH 1 | - |
| AXYL_01087 | 1160993..1161415 | - | 423 | ADP14431 | arsenate reductase (glutaredoxin) 1 | - |
| AXYL_01088 | 1161432..1162508 | - | 1077 | ADP14432 | sodium bile acid symporter family protein 1 | - |
| AXYL_01089 | 1162519..1163013 | - | 495 | ADP14433 | low molecular weight phosphotyrosine protein phosphatase family protein | - |
| AXYL_01090 | 1163016..1163354 | - | 339 | ADP14434 | bacterial regulatory protein, ArsR family protein 1 | - |
| AXYL_01091 | 1163505..1164071 | + | 567 | ADP14435 | PilL protein | tfc2 |
| AXYL_01092 | 1164068..1164712 | + | 645 | ADP14436 | hypothetical protein | - |
| AXYL_01093 | 1164727..1165452 | + | 726 | ADP14437 | hypothetical protein | tfc3 |
| AXYL_01094 | 1165434..1166024 | + | 591 | ADP14438 | transglycosylase SLT domain protein 2 | virB1 |
| AXYL_01095 | 1166021..1166560 | + | 540 | ADP14439 | hypothetical protein | tfc5 |
| AXYL_01096 | 1166565..1168754 | + | 2190 | ADP14440 | hypothetical protein | - |
| AXYL_01097 | 1168751..1169500 | + | 750 | ADP14441 | putative membrane protein 10 | tfc7 |
| AXYL_01098 | 1169599..1169982 | + | 384 | ADP14442 | hypothetical protein | tfc8 |
| AXYL_01099 | 1169979..1170212 | + | 234 | ADP14443 | hypothetical protein | tfc9 |
| AXYL_01100 | 1170229..1170588 | + | 360 | ADP14444 | putative membrane protein 11 | tfc10 |
| AXYL_01101 | 1170600..1170998 | + | 399 | ADP14445 | hypothetical protein | tfc11 |
| AXYL_01102 | 1170995..1171687 | + | 693 | ADP14446 | hypothetical protein | tfc12 |
| AXYL_01103 | 1171684..1172595 | + | 912 | ADP14447 | hypothetical protein | tfc13 |
| AXYL_01104 | 1172585..1174003 | + | 1419 | ADP14448 | hypothetical protein | tfc14 |
| AXYL_01105 | 1173984..1174433 | + | 450 | ADP14449 | signal recognition particle GTPase | tfc15 |
| AXYL_01106 | 1174433..1177327 | + | 2895 | ADP14450 | type IV secretory pathway, VirB4 component | virb4 |
| AXYL_01107 | 1177341..1178105 | + | 765 | ADP14451 | hypothetical protein | - |
| AXYL_01108 | 1178281..1178775 | + | 495 | ADP14452 | DNA repair protein RadC 1 | - |
| AXYL_01109 | 1178993..1179385 | + | 393 | ADP14453 | hypothetical protein | tfc24 |
| AXYL_01110 | 1179382..1180332 | + | 951 | ADP14454 | hypothetical protein | tfc23 |
| AXYL_01111 | 1180342..1181736 | + | 1395 | ADP14455 | hypothetical protein | tfc22 |
| AXYL_01112 | 1181733..1182104 | + | 372 | ADP14456 | putative membrane protein 12 | tfc18 |
| AXYL_01113 | 1182118..1183635 | + | 1518 | ADP14457 | TraG-like family protein | tfc19 |
| AXYL_01114 | 1183651..1184028 | - | 378 | ADP14458 | hypothetical protein | - |
| AXYL_01115 | 1184055..1184513 | - | 459 | ADP14459 | hypothetical protein | - |
| AXYL_01116 | 1184513..1184830 | - | 318 | ADP14460 | transcriptional regulator, AbrB family domain protein | - |
| AXYL_01117 | 1185130..1187007 | + | 1878 | ADP14461 | hypothetical protein | - |
| AXYL_01118 | 1187091..1187228 | + | 138 | ADP14462 | hypothetical protein | - |
| AXYL_01119 | 1187262..1187519 | + | 258 | ADP14463 | copper-translocating P-type ATPase 1 | - |
Host bacterium
| ID | 399 | Element type | ICE (Integrative and conjugative element) |
| Element name | ICEAxyA8-1 | GenBank | CP002287 |
| Element size | 7013095 bp | Coordinate of oriT [Strand] | 57136..57603 [-] |
| Host bacterium | Achromobacter xylosoxidans A8 | Coordinate of element | 1127770..1210913 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | merR2, merT, merA, arsH, arsC, copS, copR, copA, cusA/ybdE |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |