Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 200392 |
| Name | oriT_ICESsuSC117  |
| Organism | Streptococcus suis strain SC117 ICE element ICESsuSC117 mobile element |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | MW026423 (11567..11588 [-], 22 nt) |
| oriT length | 22 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 22 nt
>oriT_ICESsuSC117
ATAGTGGGTTATACTTTACATG
ATAGTGGGTTATACTTTACATG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 14417 | GenBank | QPI69497 |
| Name | Relaxase_-_ICESsuSC117 |
UniProt ID | _ |
| Length | 663 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 663 a.a. Molecular weight: 74799.50 Da Isoelectric Point: 4.8494
>QPI69497.1 chromosome segregation ATPase [Streptococcus suis]
MVVTKHFAVHGNKYRKSLIKYILNPAKTDQLKLVSDFGMSNYLDFPNSEEIVEMYQANFVNNDRLYDSRN
DRQQIKQNKIHAHHLIQSFSPEDNLTPEEINRIGYETIKELTGGNFRFIVTTHTDRLHVHNHILINSVDL
NSHKKLKWDYAQERNLRMISDRLSKEAGAKIITPNRYSHEKFVTYRKSNHKFELKQRLYFLMENSKDFDD
FLSKAEALNVQIVILASGSVSSGVSANENKEISYNVLVSENKSIEDVEDVLQSQGIKVTDKIPEINFLTI
STEKSEDTIKKENSNYIDDIVIDNTMTVKPNITYLYGDKVYTNTNLDFWGNQWDMQKSISTGSKFQHKSS
GKATIGVIDSGITYDNPDIYSHIISVQNFTSDLETGIVDNQNVVDKIGHGTSVVGQISSSGEYLGIAPDM
KIRMYRVFDEGNAQDQWILKALIQAAKDDVDVINLSLGEYLLRDSTDEDDDTALINIYQRAINYAHNQGS
VVVASVGDEGMDLQNQDELKNYLGSLRGKDYSQVDGTVQDIPAELDNVVTVGSVDDNDLVSSFSNQGNGD
IDIYATGGGSQALSKVGYDKWVADKLYEKEWILVPTLEGKYTYAYGTSISTPKVSAALGLIIEKYNLKDQ
PDEAIRILYDNCFLSNNGNNGQIRLLNITNFVQ
MVVTKHFAVHGNKYRKSLIKYILNPAKTDQLKLVSDFGMSNYLDFPNSEEIVEMYQANFVNNDRLYDSRN
DRQQIKQNKIHAHHLIQSFSPEDNLTPEEINRIGYETIKELTGGNFRFIVTTHTDRLHVHNHILINSVDL
NSHKKLKWDYAQERNLRMISDRLSKEAGAKIITPNRYSHEKFVTYRKSNHKFELKQRLYFLMENSKDFDD
FLSKAEALNVQIVILASGSVSSGVSANENKEISYNVLVSENKSIEDVEDVLQSQGIKVTDKIPEINFLTI
STEKSEDTIKKENSNYIDDIVIDNTMTVKPNITYLYGDKVYTNTNLDFWGNQWDMQKSISTGSKFQHKSS
GKATIGVIDSGITYDNPDIYSHIISVQNFTSDLETGIVDNQNVVDKIGHGTSVVGQISSSGEYLGIAPDM
KIRMYRVFDEGNAQDQWILKALIQAAKDDVDVINLSLGEYLLRDSTDEDDDTALINIYQRAINYAHNQGS
VVVASVGDEGMDLQNQDELKNYLGSLRGKDYSQVDGTVQDIPAELDNVVTVGSVDDNDLVSSFSNQGNGD
IDIYATGGGSQALSKVGYDKWVADKLYEKEWILVPTLEGKYTYAYGTSISTPKVSAALGLIIEKYNLKDQ
PDEAIRILYDNCFLSNNGNNGQIRLLNITNFVQ
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 16939 | GenBank | QPI69521 |
| Name | t4cp1_-_ICESsuSC117 |
UniProt ID | _ |
| Length | 443 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 443 a.a. Molecular weight: 50619.89 Da Isoelectric Point: 9.6744
>QPI69521.1 hypothetical protein [Streptococcus suis]
MYSRQKAFVFGLLGLAFGYFCHRLTLLYDSLTNAPPMERFAYLLGEGLNQAFNPLWLFSFTQKSLLAFIL
GVLTMTLVYLYVSTGQKVYREGEEYGSARFGTSKEKRNFYSKNPFNDTILARDVRLTLLEKKKPQFDRNK
NLIVIGGSGAGKTFRFVKPNLIQLNCSNIVVDPKDHLAEKTGKLFLENGYQVKVLDLVNMTNSDGFNPFR
YVETENDLNRMLTVYFNNTKGNGSRSDPFWDEASMTLVRAIAYYLVDFYNPPGSSKQEQEARRKRGRYPA
FSEIGKLIKLLSKGDNQDKSVLEVLFEDYAKKYGHENFTMRNWADFQNYKDKTLDSVIAVTTAKFALFNI
QSVIDLTQKDTMDLKTWGTQKTMVYLVIPDNDTTFRFLSALFFSTVFSTLTRQADVDFKGQLPIHVRSYL
DEFANGVTRSTPKAVGITDKSVA
MYSRQKAFVFGLLGLAFGYFCHRLTLLYDSLTNAPPMERFAYLLGEGLNQAFNPLWLFSFTQKSLLAFIL
GVLTMTLVYLYVSTGQKVYREGEEYGSARFGTSKEKRNFYSKNPFNDTILARDVRLTLLEKKKPQFDRNK
NLIVIGGSGAGKTFRFVKPNLIQLNCSNIVVDPKDHLAEKTGKLFLENGYQVKVLDLVNMTNSDGFNPFR
YVETENDLNRMLTVYFNNTKGNGSRSDPFWDEASMTLVRAIAYYLVDFYNPPGSSKQEQEARRKRGRYPA
FSEIGKLIKLLSKGDNQDKSVLEVLFEDYAKKYGHENFTMRNWADFQNYKDKTLDSVIAVTTAKFALFNI
QSVIDLTQKDTMDLKTWGTQKTMVYLVIPDNDTTFRFLSALFFSTVFSTLTRQADVDFKGQLPIHVRSYL
DEFANGVTRSTPKAVGITDKSVA
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4SS
T4SS were predicted by using oriTfinder2.
Region 1: 37619..59887
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Locus_22 | 37619..38170 | - | 552 | QPI69512 | hypothetical protein | gbs1354 |
| Locus_23 | 38695..39375 | + | 681 | QPI69513 | mobile element protein | - |
| Locus_24 | 39946..44193 | - | 4248 | QPI69514 | agglutinin receptor | prgB |
| Locus_25 | 44377..45132 | - | 756 | QPI69515 | hypothetical protein | - |
| Locus_26 | 45122..46126 | - | 1005 | QPI69516 | hypothetical protein | - |
| Locus_27 | 46246..49047 | - | 2802 | QPI69517 | hypothetical protein | prgK |
| Locus_28 | 49049..51262 | - | 2214 | QPI69518 | TrsE-like protein | virb4 |
| Locus_29 | 51901..52755 | - | 855 | QPI69519 | Tn5252 | prgHb |
| Locus_30 | 53677..55587 | - | 1911 | QPI69520 | retron-type RNA-directed DNA polymerase | - |
| Locus_31 | 56339..57670 | - | 1332 | QPI69521 | hypothetical protein | - |
| Locus_32 | 58236..58820 | - | 585 | QPI69522 | CAAX family membrane-bound protease | - |
| Locus_33 | 59459..59887 | - | 429 | QPI69523 | hypothetical protein | gbs1369 |
| Locus_34 | 59871..61226 | - | 1356 | QPI69524 | modification methylase HgiDII | - |
| Locus_35 | 61375..62193 | - | 819 | QPI69525 | replication initiation protein A | - |
| Locus_36 | 62547..63803 | + | 1257 | QPI69526 | mobile element protein | - |
Host bacterium
| ID | 349 | Element type | ICE (Integrative and conjugative element) |
| Element name | ICESsuSC117 | GenBank | MW026423 |
| Element size | 63983 bp | Coordinate of oriT [Strand] | 11567..11588 [-] |
| Host bacterium | Streptococcus suis strain SC117 ICE element ICESsuSC117 mobile element | Coordinate of element | 1..63983 |
Cargo genes
| Drug resistance gene | erm(T), tet(O), erm(B) |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA21 |