Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   200317
Name   oriT_ICE_SsalJF_rpsI in_silico
Organism   Streptococcus salivarius strain JF
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   CP014144 (11146..11294 [-], 149 nt)
oriT length   149 nt
IRs (inverted repeats)      111..116, 124..129  (CACTTT..AAAGTG)
 102..107, 111..116  (AAAGTG..CACTTT)
 9..15, 28..34  (AACCCCC..GGGGGTT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 149 nt

>oriT_ICE_SsalJF_rpsI
GAGACTTCAACCCCCGATTTCTAATAGGGGGGTTACATTTGGCCAAAGTGCCACGTCCACCCCTCCTCATTCCTTGTGGGAGTTGGGATTTCAAGATTTAGAAAGTGTGTCACTTTGGTCAAAAAAGTGTGTCACTTAATCAAAAGGAG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14351 GenBank   AMB81938
Name   Rep_trans_AWB63_00490_ICE_SsalJF_rpsI insolico UniProt ID   _
Length   410 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 410 a.a.        Molecular weight: 48375.92 Da        Isoelectric Point: 6.7229

>AMB81938.1 Cro/Cl family transcriptional regulator [Streptococcus salivarius]
MTKISPFQIKNFRKQTGLSQKSFAQAVNLPIRTYRSYESGERGLTIDKFRELKEKLGYYQECHKNNLRAH
IDYLRLTFPSLRDLEAFCENFLFCHLSEFTDQETRLMNYTHLWQRGNIWIFDFFDKSATNNYQTCLQLSG
QGCREMELLLEHKGISWHTFLQNILYAYEEVRVKRLDIALDELYKGYGHEEEHIQIPKLIDKLYAKEIVL
DTIRKWNITGGGSFTDNDDMEANHGLSLYFGSRQSQLYFNFYEKRYEIARMENISLEESLEIFGIWNRYE
LRFSDQKAQGVVEEYINGVDLGEIARGIVNKEIQVYDGVTRFGAYKPDEKWQRLFGGVEPLKLSTSPQPY
SIERTIRWLTYQVANSLALVSEADKIMQTEYMKMIQNSGEITDRGKAILRLLKTNKHYEH

  Protein domains


Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(9-57)

Rolling Circle replication initiation protein N-terminal domain (Rol_Rep_N)

(69-162)

Replication initiation factor (Rep_trans)

(172-384)


  Protein structure



No available structure.




T4CP

ID   16844 GenBank   AMB81939
Name   tcpA_AWB63_00495_ICE_SsalJF_rpsI insolico UniProt ID   _
Length   562 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 562 a.a.        Molecular weight: 64917.94 Da        Isoelectric Point: 6.3084

>AMB81939.1 cell division protein FtsK [Streptococcus salivarius]
MKLFTYRGIRVRAFYRHIRGITWFIWWFPSLLAIGNYCYLNLEELKDHPLPQIYYIGGILVASCLIAYLL
NRMCYEKIVFFQKLNSLRILSRFLIENNLYLIKNIRRENKTIEKIVLPQVYLKQSRYKIEVHFILEGNKF
QDRFLNLGSTLEVMFNGDFRNKTFDKRFITYDIAINRIDSRITINEVEVKGSKLQLMNDVTWDYIEEPHL
LIGGGTGGGKTVVLMTIIYALAKIGFVDICDPKNSDLAGLKKIPVFHGRVYTSKEDIIQCFKENVDFMEK
RYELMSTSPKFQAGKNFTHYGMTPKFILVDEWAALMAKIDRDYSLQSELMEYLSQLVLEGRQAGVFIIFA
MQRPDGEFIKTALRDNFMKRLSVGHLESTGYDMMFGDANKTKEFKKLDEINGVKVKGRGYIANNGDLAGE
FFSPYVPLDQGFSFYDAYAKIPIMEFNGEEFEVFGEGHQQSEPIEPIEEEEALDTGTNGRPLKEFAEEQD
LKMVTLRKIIYLLQEQGIVFERTESAILVNPFQEELLLESLIHFEEGGRKSYPKAVEATLSHHGLGQGQG
QA

  Protein domains


Predicted by InterproScan.

FtsK/SpoIIIE family (FtsK_SpoIIIE)

(198-287)

  Protein structure



No available structure.




Host bacterium

ID   284 Element type   ICE (Integrative and conjugative element)
Element name   ICE_SsalJF_rpsI GenBank   CP014144
Element size   2191044 bp Coordinate of oriT [Strand]   11146..11294 [-]
Host bacterium   Streptococcus salivarius strain JF Coordinate of element   70603..106907

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -