Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 200198 |
| Name | oriT_ICEKpnFDAARGOS_447-1  |
| Organism | Klebsiella pneumoniae strain FDAARGOS_447 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | CP023949 (11944..12067 [-], 124 nt) |
| oriT length | 124 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 124 nt
>oriT_ICEKpnFDAARGOS_447-1
CCGATTAGGCGCGACCAACCCCTTTAAAGCAGCGTTCCCATTATTTCGAGCTTGCGAAGAAAAAATAGGCTAAACGCGCGTCTTAAAGGGGTTGGTCGCGCGTAGCGTGCGACGGTGTGCCGCC
CCGATTAGGCGCGACCAACCCCTTTAAAGCAGCGTTCCCATTATTTCGAGCTTGCGAAGAAAAAATAGGCTAAACGCGCGTCTTAAAGGGGTTGGTCGCGCGTAGCGTGCGACGGTGTGCCGCC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
T4CP
| ID | 16667 | GenBank | ATM70381 |
| Name | t4cp2_CRN71_08860_ICEKpnFDAARGOS_447-1 |
UniProt ID | _ |
| Length | 619 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 619 a.a. Molecular weight: 69590.86 Da Isoelectric Point: 6.6673
>ATM70381.1 MFS transporter [Klebsiella pneumoniae]
MILNKLTASLSPIVNGMLAVLAFVQQKQLVLALLAGLTMPFFASMKSDERQKAPLWKKLIIAFSLLCFLS
GTLAPVVIGSFQWLYKIRPTSDNTVLAWSVRIAFTVTGIIFHIMLRRIFTPELDKIKKRLVKKTTLEREL
RTDVRTVKSLLPETLHYNPLDYIDLNKGIFTGMGRENEPMYLPLKDWQKQHADIIGTTGAGKGVAAGILL
YQSILAGEGVFVMDPKDDEWAPHLYRKACEDAGKPFALIDLRKQQYQLNLIEDITPDELEELFVAGFSLA
EKGQESDFYRIDDRKAARIAAQFVSDNPSTTIRDVYNGDYVQSIAEKIKAFFGKIEELALLNAINSPEGF
SLKHIFDEGGCCYVVGSMRNSKIITAQRMLLVRLYQLAEKRDRVIDVPRPIAVYLSELKYHLSRSALEGL
GAARDKGVHIIMDHQSIADLKDCPADLKGDAVVGAVVENAKFKLVYRVMDPDTAEWVARMSGTILVDDEL
RKAKTDNMLTETIDSERTIRQAERFFIDSNMILNLPDFVSFIFTTKTLPSASLISPIKVRKRQLKTFSVS
PDISATVAPVKIMLDFCEDDKPAMSDVMTTHPALFFDESEVKPVKPKPDDEEHLSPLDF
MILNKLTASLSPIVNGMLAVLAFVQQKQLVLALLAGLTMPFFASMKSDERQKAPLWKKLIIAFSLLCFLS
GTLAPVVIGSFQWLYKIRPTSDNTVLAWSVRIAFTVTGIIFHIMLRRIFTPELDKIKKRLVKKTTLEREL
RTDVRTVKSLLPETLHYNPLDYIDLNKGIFTGMGRENEPMYLPLKDWQKQHADIIGTTGAGKGVAAGILL
YQSILAGEGVFVMDPKDDEWAPHLYRKACEDAGKPFALIDLRKQQYQLNLIEDITPDELEELFVAGFSLA
EKGQESDFYRIDDRKAARIAAQFVSDNPSTTIRDVYNGDYVQSIAEKIKAFFGKIEELALLNAINSPEGF
SLKHIFDEGGCCYVVGSMRNSKIITAQRMLLVRLYQLAEKRDRVIDVPRPIAVYLSELKYHLSRSALEGL
GAARDKGVHIIMDHQSIADLKDCPADLKGDAVVGAVVENAKFKLVYRVMDPDTAEWVARMSGTILVDDEL
RKAKTDNMLTETIDSERTIRQAERFFIDSNMILNLPDFVSFIFTTKTLPSASLISPIKVRKRQLKTFSVS
PDISATVAPVKIMLDFCEDDKPAMSDVMTTHPALFFDESEVKPVKPKPDDEEHLSPLDF
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
| ID | 16668 | GenBank | ATM70394 |
| Name | t4cp2_CRN71_08925_ICEKpnFDAARGOS_447-1 |
UniProt ID | _ |
| Length | 912 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 912 a.a. Molecular weight: 103068.02 Da Isoelectric Point: 7.4625
>ATM70394.1 ATPase [Klebsiella pneumoniae]
MAKLLKAMKRPAALWGVPMVPLLAVTGVTIIVAIWTSVALLFLLPVQFLVMKSLTRNEPMRFNLIAVWLR
AKGKPVANRLFGATTFMPVEHDDVDIKEFLDAMKLNQCATIKKYIPYSSHIHQHVVRSPKSDLYCTWELM
GTPFDCESDESLQFGTNQLHGLIRSFEGMPVTFYIHNDRNTFTDNLHKDSGNPYADEVSRLYYASVGLFR
RNRLFLTVCYRPFVSLEKAERKRMKDSQKLKELDGALLEMLEIKSTLDTALSRYGARPLGTFTEGNAVFS
SQLAFYEYLLTHQWRKVRVTRTPAYDVMGAAALFFSAESGQINHANGTQYFRGLEVKEFAEETATGMMDS
LLYAPCDYVITQSYTCMSREEAKKAIKRTRRLLMSADDDAVSQRLDLDVALDLLTSGKIAYGKHHFSIMV
YSPSLESLVADTNEISNALNNIGITPVPAEISLSAAYMAQLPGNYNLRPRKGELSSQNFVELAALHNFYP
GKRDKAPWGDAMALLRTPSGDGYYINLHNTLADKDEFNEKNPASTCILGTNGSGKTMLMTFFEIMQQKYG
REDSFSPDAKTKRLTTVYLDKDRGAEMNIRALGGRYYRVISGESTGWNPFSLPATKRNINFIKQLMKILC
TRNGSTISPRDERRLSDAVNAVMNDEPQYRVYGITRMLENLPEPATKEAQENGLSIRLSQWAQGGEFGWV
FDNESDTFDISNCDNFGIDGTEFLDDASVCAPISFYLLYRITSLLDGRRLVIFMDEFWKWLRDPVFKDFA
YNKLKTIRKLNGMLVVGTQSPAEIIKDDIAPAVIEQCGTQILAANPNADRAHYVDGMKFEPEVFDVVKGL
DPQARQYVVVKNQFKRGDTKRFAARVTLDLSGIGRYTKVMSGDAPNLEIFESIYREGMQPHEWLDTYLAK
AL
MAKLLKAMKRPAALWGVPMVPLLAVTGVTIIVAIWTSVALLFLLPVQFLVMKSLTRNEPMRFNLIAVWLR
AKGKPVANRLFGATTFMPVEHDDVDIKEFLDAMKLNQCATIKKYIPYSSHIHQHVVRSPKSDLYCTWELM
GTPFDCESDESLQFGTNQLHGLIRSFEGMPVTFYIHNDRNTFTDNLHKDSGNPYADEVSRLYYASVGLFR
RNRLFLTVCYRPFVSLEKAERKRMKDSQKLKELDGALLEMLEIKSTLDTALSRYGARPLGTFTEGNAVFS
SQLAFYEYLLTHQWRKVRVTRTPAYDVMGAAALFFSAESGQINHANGTQYFRGLEVKEFAEETATGMMDS
LLYAPCDYVITQSYTCMSREEAKKAIKRTRRLLMSADDDAVSQRLDLDVALDLLTSGKIAYGKHHFSIMV
YSPSLESLVADTNEISNALNNIGITPVPAEISLSAAYMAQLPGNYNLRPRKGELSSQNFVELAALHNFYP
GKRDKAPWGDAMALLRTPSGDGYYINLHNTLADKDEFNEKNPASTCILGTNGSGKTMLMTFFEIMQQKYG
REDSFSPDAKTKRLTTVYLDKDRGAEMNIRALGGRYYRVISGESTGWNPFSLPATKRNINFIKQLMKILC
TRNGSTISPRDERRLSDAVNAVMNDEPQYRVYGITRMLENLPEPATKEAQENGLSIRLSQWAQGGEFGWV
FDNESDTFDISNCDNFGIDGTEFLDDASVCAPISFYLLYRITSLLDGRRLVIFMDEFWKWLRDPVFKDFA
YNKLKTIRKLNGMLVVGTQSPAEIIKDDIAPAVIEQCGTQILAANPNADRAHYVDGMKFEPEVFDVVKGL
DPQARQYVVVKNQFKRGDTKRFAARVTLDLSGIGRYTKVMSGDAPNLEIFESIYREGMQPHEWLDTYLAK
AL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4SS
T4SS were predicted by using oriTfinder2.
Region 1: 1795471..1805406
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRN71_08855 | 1791071..1791817 | - | 747 | ATM70380 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| CRN71_08860 | 1791827..1793686 | - | 1860 | ATM70381 | MFS transporter | - |
| CRN71_08865 | 1793686..1793964 | - | 279 | ATM70382 | hypothetical protein | - |
| CRN71_08870 | 1793983..1794375 | - | 393 | ATM70383 | hypothetical protein | - |
| CRN71_08875 | 1794396..1794701 | - | 306 | ATM70384 | dpoa decarboxylase | - |
| CRN71_08880 | 1794735..1795040 | - | 306 | ATM70385 | conjugal transfer protein | - |
| CRN71_08885 | 1795076..1795474 | - | 399 | ATM70386 | Cag pathogenicity island protein Cag12 | - |
| CRN71_08890 | 1795471..1796496 | - | 1026 | ATM70387 | P-type DNA transfer ATPase VirB11 | virB11 |
| CRN71_08895 | 1796486..1797742 | - | 1257 | ATM70388 | type VI secretion protein | virB10 |
| CRN71_08900 | 1797772..1798680 | - | 909 | ATM70389 | P-type conjugative transfer protein VirB9 | virB9 |
| CRN71_08905 | 1798677..1799360 | - | 684 | ATM70390 | type IV secretion system protein | virB8 |
| CRN71_08910 | 1799582..1800655 | - | 1074 | ATM70391 | conjugal transfer protein TrbL | virB6 |
| CRN71_08915 | 1800659..1800901 | - | 243 | ATM70392 | hypothetical protein | - |
| CRN71_08920 | 1800909..1801616 | - | 708 | ATM70393 | type IV secretion system protein VirB5 | - |
| CRN71_08925 | 1801634..1804372 | - | 2739 | ATM70394 | ATPase | virb4 |
| CRN71_08930 | 1804385..1804678 | - | 294 | ATM70395 | TriB protein | virB2 |
| CRN71_08935 | 1804678..1805406 | - | 729 | ATM70396 | type VI secretion protein | virB1 |
| CRN71_08940 | 1805461..1805694 | - | 234 | ATM70397 | hypothetical protein | - |
| CRN71_08945 | 1806263..1806430 | - | 168 | ATM70398 | transcriptional regulator | - |
| CRN71_08950 | 1806634..1806843 | - | 210 | ATM70399 | conjugal transfer protein TraR | - |
| CRN71_08955 | 1806833..1807414 | - | 582 | ATM70400 | DUF2857 domain-containing protein | - |
| CRN71_08960 | 1807399..1807583 | - | 185 | Protein_1751 | hypothetical protein | - |
| CRN71_08965 | 1807602..1807787 | - | 186 | ATM70401 | transcriptional regulator | - |
| CRN71_08970 | 1807927..1808910 | - | 984 | ATM70402 | hypothetical protein | - |
Host bacterium
| ID | 187 | Element type | ICE (Integrative and conjugative element) |
| Element name | ICEKpnFDAARGOS_447-1 | GenBank | CP023949 |
| Element size | 5226396 bp | Coordinate of oriT [Strand] | 11944..12067 [-] |
| Host bacterium | Klebsiella pneumoniae strain FDAARGOS_447 | Coordinate of element | 1781989..1840185 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | fyuA, ybtE, ybtT, ybtU, irp1, irp2, ybtA, ybtP, ybtQ, ybtX, ybtS |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |