Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 200089 |
| Name | oriT_MGIVvuTai1  |
| Organism | Vibrio vulnificus YJ016 |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | BA000037 (285176..285455 [+], 280 nt) |
| oriT length | 280 nt |
| IRs (inverted repeats) | IR1: 177..191, 213..227 (ATCGAGAAGCTAAAC..GTTTGGCGTTTCGAT) IR2: 226..240, 249..263 (ATCCAAAAGCCAAAC..GTTTTGGCGTATGGG) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note |
oriT sequence
Download Length: 280 nt
>oriT_MGIVvuTai1
GCTGTTTGGCGGCATTTAGCCCATGCAAAAAAATCGAGACGCCAAACGATCGTTTGCATTCTGGGTTAGCAAAAACAAACGGTTTGTACTTTGATGCCGAGGTTGGTTTAGGGTGCAAAAAGTGCCAAACCTTGCTTTGATCCAGTACTGGCAAGGCTTAGCAGCGTTGGATTTCAATCGAGAAGCTAAACAGTGAATGGGCTAATTTCCCTGTTTGGCGTTTCGATCCAAAAGCCAAACGGATAGTGGTTTTGGCGTATGGGGGTAAAGGCATGGGGAA
GCTGTTTGGCGGCATTTAGCCCATGCAAAAAAATCGAGACGCCAAACGATCGTTTGCATTCTGGGTTAGCAAAAACAAACGGTTTGTACTTTGATGCCGAGGTTGGTTTAGGGTGCAAAAAGTGCCAAACCTTGCTTTGATCCAGTACTGGCAAGGCTTAGCAGCGTTGGATTTCAATCGAGAAGCTAAACAGTGAATGGGCTAATTTCCCTGTTTGGCGTTTCGATCCAAAAGCCAAACGGATAGTGGTTTTGGCGTATGGGGGTAAAGGCATGGGGAA
Visualization of oriT structure (The oriT was characterized experimentally)
oriT secondary structure
Predicted by RNAfold.
Download structure file
Reference
[1] Daccord A et al. (2010) Integrating conjugative elements of the SXT/R391 family trigger the excision and drive the mobilization of a new class of Vibrio genomic islands. Mol Microbiol. 78(3):576-88. [PMID:20807202]
Host bacterium
| ID | 97 | Element type | IME (Integrative mobilizable element) |
| Element name | MGIVvuTai1 | GenBank | BA000037 |
| Element size | 3354505 bp | Coordinate of oriT [Strand] | 285176..285455 [+] |
| Host bacterium | Vibrio vulnificus YJ016 | Coordinate of element | 270097..289135 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |