Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 200088 |
| Name | oriT_MGIVchUSA1  |
| Organism | Vibrio cholerae RC385 |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | NZ_AAKH02000003 (7689..7969 [-], 281 nt) |
| oriT length | 281 nt |
| IRs (inverted repeats) | IR1: 178..192, 214..228 (ATCGAGAAGCCAAAC..GTTTGGCGTTTCGAT) IR2: 227..241, 250..264 (ATCCAAAAGCCAAAC..GTTTTGGCGTAAGGG) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note |
oriT sequence
Download Length: 281 nt
>oriT_MGIVchUSA1
GCGCTGTTTGGCGGCATTTGGCTAGTGAAAAAAATCGAGACGCCAAACGATCGTTTGCATTCTGGGTTTAAAAAATCAAACGGTTTGTACTTTGATGCCGAGGTCGGTTTAGGGGGCAAAAAGTGCCAAACCTTTCTTTAAGCCAGTACCGGCAAGGCCTGCCAGCTTTGGATTTCAATCGAGAAGCCAAACAGTAAATGGGCAAATTTCCCTGTTTGGCGTTTCGATCCAAAAGCCAAACGGATAGTGGTTTTGGCGTAAGGGGGTAAAGGCATGGGGAA
GCGCTGTTTGGCGGCATTTGGCTAGTGAAAAAAATCGAGACGCCAAACGATCGTTTGCATTCTGGGTTTAAAAAATCAAACGGTTTGTACTTTGATGCCGAGGTCGGTTTAGGGGGCAAAAAGTGCCAAACCTTTCTTTAAGCCAGTACCGGCAAGGCCTGCCAGCTTTGGATTTCAATCGAGAAGCCAAACAGTAAATGGGCAAATTTCCCTGTTTGGCGTTTCGATCCAAAAGCCAAACGGATAGTGGTTTTGGCGTAAGGGGGTAAAGGCATGGGGAA
Visualization of oriT structure (The oriT was characterized experimentally)
oriT secondary structure
Predicted by RNAfold.
Download structure file
Reference
[1] Daccord A et al. (2010) Integrating conjugative elements of the SXT/R391 family trigger the excision and drive the mobilization of a new class of Vibrio genomic islands. Mol Microbiol. 78(3):576-88. [PMID:20807202]
Host bacterium
| ID | 96 | Element type | IME (Integrative mobilizable element) |
| Element name | MGIVchUSA1 | GenBank | NZ_AAKH02000003 |
| Element size | 64980 bp | Coordinate of oriT [Strand] | 7689..7969 [-] |
| Host bacterium | Vibrio cholerae RC385 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |