Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 200087 |
| Name | oriT_MGIVflInd1  |
| Organism | Vibrio fluvialis strain H-08942 |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | KC117176 (5288..5569 [-], 282 nt) |
| oriT length | 282 nt |
| IRs (inverted repeats) | IR1: 179..193, 215..229 (ATCGAGAAGCCAAGC..GTTTGGCGTTTCGAT) IR2: 228..242, 251..265 (ATCCAAAAGCCAAAC..GTTTTGGCGTATGGG) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note |
oriT sequence
Download Length: 282 nt
>oriT_MGIVflInd1
GTGCTGTTTGGCGGCATTTGGCTAGTGCAAAAAAATCGAGACGCCAAACGATCGTTTGCATTCTGGGTTTAAAAAATCAAACGGTTTGTACTTTGATGCCGAGGTTGGTTTAGGGTACAAAAAGTGCCAAACCTTGCTTTGAGTCAGTAATGGCAAGGCCTACTGGTTTTGGATTTCAATCGAGAAGCCAAGCAGTAAATGGACTAATTTCCCTGTTTGGCGTTTCGATCCAAAAGCCAAACGGATAGTGGTTTTGGCGTATGGGGGTAAAGGCATGGGGAA
GTGCTGTTTGGCGGCATTTGGCTAGTGCAAAAAAATCGAGACGCCAAACGATCGTTTGCATTCTGGGTTTAAAAAATCAAACGGTTTGTACTTTGATGCCGAGGTTGGTTTAGGGTACAAAAAGTGCCAAACCTTGCTTTGAGTCAGTAATGGCAAGGCCTACTGGTTTTGGATTTCAATCGAGAAGCCAAGCAGTAAATGGACTAATTTCCCTGTTTGGCGTTTCGATCCAAAAGCCAAACGGATAGTGGTTTTGGCGTATGGGGGTAAAGGCATGGGGAA
Visualization of oriT structure (The oriT was characterized experimentally)
oriT secondary structure
Predicted by RNAfold.
Download structure file
Reference
[1] Daccord A et al. (2010) Integrating conjugative elements of the SXT/R391 family trigger the excision and drive the mobilization of a new class of Vibrio genomic islands. Mol Microbiol. 78(3):576-88. [PMID:20807202]
Host bacterium
| ID | 95 | Element type | IME (Integrative mobilizable element) |
| Element name | MGIVflInd1 | GenBank | KC117176 |
| Element size | 23229 bp | Coordinate of oriT [Strand] | 5288..5569 [-] |
| Host bacterium | Vibrio fluvialis strain H-08942 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |