Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 200086 |
| Name | oriT_MTnSag1  |
| Organism | Streptococcus agalactiae strain UCN36 |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | AY928180 (1488..1667 [+], 180 nt) |
| oriT length | 180 nt |
| IRs (inverted repeats) | IR1: 6..24, 32..51 (AAGGAAGAATTGAGGAAAT..TCCTGTATTGAACCATATAG) IR2: 89..105, 114..129 (AATGATGCACATGATGT..TGTGTGAGACACTTCA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note |
oriT sequence
Download Length: 180 nt
>oriT_MTnSag1
GGGTAAAGGAAGAATTGAGGAAATAGAGGTTTCCTGTATTGAACCATATAGTCAAGTAATGTTCCATCTGGGATACGAGTTTGATGAAAATGATGCACATGATGTGAAGTTATTGTGTGAGACACTTCATATCGAAATTCCAAATGAGTATAGATAACTGCAAATAACAGTTTGTAGGGG
GGGTAAAGGAAGAATTGAGGAAATAGAGGTTTCCTGTATTGAACCATATAGTCAAGTAATGTTCCATCTGGGATACGAGTTTGATGAAAATGATGCACATGATGTGAAGTTATTGTGTGAGACACTTCATATCGAAATTCCAAATGAGTATAGATAACTGCAAATAACAGTTTGTAGGGG
Visualization of oriT structure (The oriT was characterized experimentally)
oriT secondary structure
Predicted by RNAfold.
Download structure file
Reference
[1] Adeline Achard et al. (2007) Characterization of a small mobilizable transposon, MTnSag1, in Streptococcus agalactiae. Journal of bacteriology. 189(11):4328-31. [PMID:17416666]
Host bacterium
| ID | 94 | Element type | IME (Integrative mobilizable element) |
| Element name | MTnSag1 | GenBank | AY928180 |
| Element size | 1724 bp | Coordinate of oriT [Strand] | 1488..1667 [+] |
| Host bacterium | Streptococcus agalactiae strain UCN36 |
Cargo genes
| Drug resistance gene | lnu(C) |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |