Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 200085 |
| Name | oriT_tISCpe8  |
| Organism | Clostridium perfringens |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | FJ589781 (1642..1845 [+], 204 nt) |
| oriT length | 204 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note |
oriT sequence
Download Length: 204 nt
>oriT_tISCpe8
GGTGTTGGAAAAATAGGAAATATTATGGTTTCTTGTATAAATGCTAAAAATCAAGTCTTATTTCACTTAGGGTATGAATTTGGAGAAAGTGATATTCATGATGTAAAATTATTATGTAAAGAATTTAACATTCCGATACCTAAAGAATATGAAAATTTTTAAATTAGCGATAATTATAATCTTTAGATTTAATAATATTACTAT
GGTGTTGGAAAAATAGGAAATATTATGGTTTCTTGTATAAATGCTAAAAATCAAGTCTTATTTCACTTAGGGTATGAATTTGGAGAAAGTGATATTCATGATGTAAAATTATTATGTAAAGAATTTAACATTCCGATACCTAAAGAATATGAAAATTTTTAAATTAGCGATAATTATAATCTTTAGATTTAATAATATTACTAT
oriT secondary structure
Predicted by RNAfold.
Download structure file
Reference
[1] Dena Lyras et al. (2009) tISCpe8, an IS1595-family lincomycin resistance element located on a conjugative plasmid in Clostridium perfringens. Journal of bacteriology. 191(20):6345-51. [PMID:19684139]
Host bacterium
| ID | 93 | Element type | IME (Integrative mobilizable element) |
| Element name | tISCpe8 | GenBank | FJ589781 |
| Element size | 1964 bp | Coordinate of oriT [Strand] | 1642..1845 [+] |
| Host bacterium | Clostridium perfringens |
Cargo genes
| Drug resistance gene | lnu(P) |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |