Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 200070 |
| Name | oriT_ICEVchMoz2  |
| Organism | Vibrio cholerae strain 3AMOZ |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | GU930741 (1..280 [+], 280 nt) |
| oriT length | 280 nt |
| IRs (inverted repeats) | 179..193, 215..229 (ATCGAGAAGCCAAAC..GTTTGGCGTTTCGAT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | _ |
oriT sequence
Download Length: 280 nt
>oriT_ICEVchMoz2
GTGCTGTTTGGCTGTGTTCGCCAAGTGCAAAAAAATCGAGACGCCAAACGATCGTTTGCATTCTGGATTTAAAAAATCAAACGGTTTGTACTTTGATGCCGAGGTTGGTATAGGGTACAAAAAGTGCCAAACCTTGCTTTGAACCAGTAATGGCAAGGCCTACCAGCGTTGGATTTCAATCGAGAAGCCAAACAGTGAATGGGCTAATTTCCCTGTTTGGCGTTTCGATCCAAAAGCCAAACGGATAGTGGTTTTGGCGTATGGGTAAAGGCATGGGGAA
GTGCTGTTTGGCTGTGTTCGCCAAGTGCAAAAAAATCGAGACGCCAAACGATCGTTTGCATTCTGGATTTAAAAAATCAAACGGTTTGTACTTTGATGCCGAGGTTGGTATAGGGTACAAAAAGTGCCAAACCTTGCTTTGAACCAGTAATGGCAAGGCCTACCAGCGTTGGATTTCAATCGAGAAGCCAAACAGTGAATGGGCTAATTTCCCTGTTTGGCGTTTCGATCCAAAAGCCAAACGGATAGTGGTTTTGGCGTATGGGTAAAGGCATGGGGAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 78 | Element type | |
| Element name | ICEVchMoz2 | GenBank | GU930741 |
| Element size | 280 bp | Coordinate of oriT [Strand] | 1..280 [+] |
| Host bacterium | Vibrio cholerae strain 3AMOZ |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |