Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 200061
• Name: oriT_ICEVchB33
• Organism: Vibrio cholerae B33
• Sequence Completeness: intact
• NCBI accession of oriT (coordinates [strand]): NZ_AAWE01000040 (26285..26583 [+], 299 nt)
• oriT length: 299 nt
• IRs (inverted repeats): 178..192, 216..230 (ATCGAGACGCCAAAC..GTTTGGCGTTTCGAT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: _

oriT sequence

• Length: 299 nt

>oriT_ICEVchB33
GCTCTGTTTGGCGGCTGGTGACCTAGCCAAAAAAATTGAGACGCCAAACGTCGTTTGCATTCTGGCCTGAACTTGCCAAACGGTTTGTATCTTCATGGCGATACGTCTTTTTAGGTGTTTTTAAGTGAAATCAGCCTGTATCCCTTGTCGGGTATGGGATTGAGCGAGTCGATTTATATCGAGACGCCAAACAGTGATTGTGACGGCAGTTTTACGTTTGGCGTTTCGATCCAAAAGCCAAACGGATAGTGGTTTTGGCTTTAGGGGTTAATTGGATGGGGAAATTGGTTTGGTAGAAA

oriT secondary structure

Predicted by RNAfold.

Reference

[1] Ceccarelli D et al. (2008) Identification of the origin of transfer (oriT) and a new gene required for mobilization of the SXT/R391 family of integrating conjugative elements. J Bacteriol. 190(15):5328-38. [PMID:18539733]

Host bacterium

• ID: 69
• Element name: ICEVchB33 (ICEVchMoz10)
• GenBank: NZ_AAWE01000040
• Element size: 29891 bp
• Coordinate of oriT [Strand]: 26285..26583 [+]
• Host bacterium: Vibrio cholerae B33

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -