Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 200039 |
| Name | oriT_ICESsu98HAH33-1  |
| Organism | Streptococcus suis 98HAH33 |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | CP000408 (903334..903548 [-], 215 nt) |
| oriT length | 215 nt |
| IRs (inverted repeats) | 61..76, 80..95 (ACTTAACCCCCCGTAT..ACAGGGGGGTACAAAT) 123..134, 139..150 (GAAAATCCTTTG..CAAGGGATTTAC) |
| Location of nic site | 135..136 |
| Conserved sequence flanking the nic site |
TGG|T |
| Note | blastn alignment with the oriT_Tn916 |
oriT sequence
Download Length: 215 nt
>oriT_ICESsu98HAH33-1
AAGCGGAAGTCGCAGGTGTGGACTGATCTTGCTGGCTGGTGTGGCAATAGCCACGCCAGCACTTAACCCCCCGTATCTAACAGGGGGGTACAAATCGACAGGAAACAGTCAAAAAAACATTAGAAAATCCTTTGGTTACAAGGGATTTACAAAATTTCAGCGTATGTCAAATGGGCTTTAAAAGTTGACATACGCCTTTTTGATTGGAGGGATTT
AAGCGGAAGTCGCAGGTGTGGACTGATCTTGCTGGCTGGTGTGGCAATAGCCACGCCAGCACTTAACCCCCCGTATCTAACAGGGGGGTACAAATCGACAGGAAACAGTCAAAAAAACATTAGAAAATCCTTTGGTTACAAGGGATTTACAAAATTTCAGCGTATGTCAAATGGGCTTTAAAAGTTGACATACGCCTTTTTGATTGGAGGGATTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 253 | GenBank | ABP92094 |
| Name | Relaxase_ICESsu98HAH33-1 |
UniProt ID | _ |
| Length | 401 a.a. | PDB ID | |
| Note | Tn916, transcriptional regulator, putative | ||
Relaxase protein sequence
Download Length: 401 a.a. Molecular weight: 47398.10 Da Isoelectric Point: 6.5091
>ABP92094.1 Tn916, transcriptional regulator, putative [Streptococcus suis 98HAH33]
MEGFLLNEQTWLQHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAP
LEMLFDYVRIRFPTTDVQQVVENILQLKLSYFLHEDYGFYSYSEHYALGDIFVLCSHELDKGVLVELKGR
GCRQFESYLLAQQRSWYEFFMDVLVAGGVMKRLDLAINDKTGILNIPVLTEKCQQEECISVFRSFKSYRS
GELVRKEEKECMGNTLYIGSLQSEVYFCIYEKDYEQYKKNDIPIEDAEVKNRFEIRLKNERAYYAVRDLL
VYDNPEHTAFKIINRYIRFVDKDDSKPRSDWKLNEEWAWFIGNNRERLKLTTKPEPYSFQRTLNWLSHQV
APTLKVAIKLDEINQTQVVKDILDHAKLTDRHKQILKQQSVKEQDVITTKK
MEGFLLNEQTWLQHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAP
LEMLFDYVRIRFPTTDVQQVVENILQLKLSYFLHEDYGFYSYSEHYALGDIFVLCSHELDKGVLVELKGR
GCRQFESYLLAQQRSWYEFFMDVLVAGGVMKRLDLAINDKTGILNIPVLTEKCQQEECISVFRSFKSYRS
GELVRKEEKECMGNTLYIGSLQSEVYFCIYEKDYEQYKKNDIPIEDAEVKNRFEIRLKNERAYYAVRDLL
VYDNPEHTAFKIINRYIRFVDKDDSKPRSDWKLNEEWAWFIGNNRERLKLTTKPEPYSFQRTLNWLSHQV
APTLKVAIKLDEINQTQVVKDILDHAKLTDRHKQILKQQSVKEQDVITTKK
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 253 | GenBank | ABP92095 |
| Name | T4CP_ICESsu98HAH33-1 |
UniProt ID | _ |
| Length | 461 a.a. | PDB ID | _ |
| Note | _ | ||
T4CP protein sequence
Download Length: 461 a.a. Molecular weight: 53370.27 Da Isoelectric Point: 9.0687
>ABP92095.1 hypothetical protein SSU98_0937 [Streptococcus suis 98HAH33]
MKQRGKRIRPSGKDLVFHFTIASLLPVFLLVVGLFHVKTIQQINWQDFNLSQADKIDIPYLIISFSVAIL
ICLLVAFVFKRVRYDTVKQLYHRQKLAKMILENKWYESEQVKTEGFFKDSAGRTKEKITYFPKMYYRLKN
GLIQIRVEITLGKYQDQLLHLEKKLESGLYCELTDKELKDSYVEYTLLYDTIASRISIDEVEAKDGKLRL
MKNVWWEYDKLPHMLIAGGTGGGKTYFILTLIEALLHTDSKLYILDPKNADLADLGSVMANVYYRKEDLL
SCIETFYEEMMKRSEEMKQMKNYKTGKNYAYLGLPAHFLIFDEYVAFMEMLGTKENTAVMNKLKQIVMLG
RQAGFFLILACQRPDAKYLGDGIRDQFNFRVALGRMSEMGYGMMFGSDVQKDFFLKRIKGRGYVDVGTSV
ISEFYTPLVPKGYDFLEEIKKLSNSRQSTQATCEAEVAGVD
MKQRGKRIRPSGKDLVFHFTIASLLPVFLLVVGLFHVKTIQQINWQDFNLSQADKIDIPYLIISFSVAIL
ICLLVAFVFKRVRYDTVKQLYHRQKLAKMILENKWYESEQVKTEGFFKDSAGRTKEKITYFPKMYYRLKN
GLIQIRVEITLGKYQDQLLHLEKKLESGLYCELTDKELKDSYVEYTLLYDTIASRISIDEVEAKDGKLRL
MKNVWWEYDKLPHMLIAGGTGGGKTYFILTLIEALLHTDSKLYILDPKNADLADLGSVMANVYYRKEDLL
SCIETFYEEMMKRSEEMKQMKNYKTGKNYAYLGLPAHFLIFDEYVAFMEMLGTKENTAVMNKLKQIVMLG
RQAGFFLILACQRPDAKYLGDGIRDQFNFRVALGRMSEMGYGMMFGSDVQKDFFLKRIKGRGYVDVGTSV
ISEFYTPLVPKGYDFLEEIKKLSNSRQSTQATCEAEVAGVD
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4SS
T4SS were predicted by using oriTfinder2.
Region 1: 894243..905653
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSU98_0924 | 889431..889634 | - | 204 | ABP92082 | hypothetical protein | - |
| SSU98_0925 | 890322..890753 | - | 432 | ABP92083 | hypothetical protein | - |
| SSU98_0926 | 891248..891601 | + | 354 | ABP92084 | Tn916, transcriptional regulator, putative | - |
| SSU98_0928 | 891947..893881 | - | 1935 | ABP92086 | Translation elongation factor (GTPases) | - |
| SSU98_0927 | 892774..892926 | + | 153 | ABP92085 | hypothetical protein | - |
| SSU98_0929 | 894243..895175 | - | 933 | ABP92087 | Tn916, hypothetical protein | orf13 |
| SSU98_0930 | 895172..896173 | - | 1002 | ABP92088 | hypothetical protein | orf14 |
| SSU98_0931 | 896170..898347 | - | 2178 | ABP92089 | membrane protein, putative | orf15 |
| SSU98_0932 | 898350..900806 | - | 2457 | ABP92090 | hypothetical protein | virb4 |
| SSU98_0933 | 900781..901218 | - | 438 | ABP92091 | hypothetical protein | orf17a |
| SSU98_0934 | 901261..901758 | - | 498 | ABP92092 | hypothetical protein | - |
| SSU98_0935 | 901786..902097 | - | 312 | ABP92093 | hypothetical protein | orf19 |
| SSU98_0936 | 902140..903345 | - | 1206 | ABP92094 | Tn916, transcriptional regulator, putative | - |
| SSU98_0937 | 903523..904908 | - | 1386 | ABP92095 | hypothetical protein | virb4 |
| SSU98_0938 | 904937..905323 | - | 387 | ABP92096 | hypothetical protein | orf23 |
| SSU98_0939 | 905339..905653 | - | 315 | ABP92097 | hypothetical protein | orf23 |
| SSU98_0940 | 906409..908241 | - | 1833 | ABP92098 | DNA helicase | - |
| SSU98_0941 | 908213..908560 | - | 348 | ABP92099 | hypothetical protein | - |
| SSU98_0942 | 908629..910299 | - | 1671 | ABP92100 | hypothetical protein | - |
Host bacterium
| ID | 44 | Element type | Transposon |
| Element name | ICESsu98HAH33-1 | GenBank | CP000408 |
| Element size | 2095698 bp | Coordinate of oriT [Strand] | 903334..903548 [-] |
| Host bacterium | Streptococcus suis 98HAH33 | Coordinate of element | 887958..905988 |
Cargo genes
| Drug resistance gene | tet(M) |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |