Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 200020 |
| Name | oriT_HPI-ICEEh1  |
| Organism | Enterobacter hormaechei recombination hotspot with five |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | FN297818 (88506..88755 [+], 250 nt) |
| oriT length | 250 nt |
| IRs (inverted repeats) | 1..11, 158..168 (GCACACCGTCG..CGACGGTGTGC) 57..75, 131..149 (GCGCGACCACCCCCTTTAA..TTAAAGGGGGTGGTCGCGC) |
| Location of nic site | 142..143 |
| Conserved sequence flanking the nic site |
GGGTG|GTCGCG |
| Note | blastn alignment with the oriT_ ICEKp1 |
oriT sequence
Download Length: 250 nt
>oriT_HPI-ICEEh1
GCACACCGTCGCAGCCAGGCTATATTTCCCGCCCCGGCGGGGAATATGCCGATTAGGCGCGACCACCCCCTTTAAAGCAGCGTTCCCATTTTTTCGAGCTTGCGAAGAAAAAATAGGCTAAACGCGCGTCTTAAAGGGGGTGGTCGCGCGTAGCGTGCGACGGTGTGCCGCCTTTGACCCTGGGGGTTTTGGCGTGGCGTCCAGCCGCGACATTACCCCCATGCGACAGGCAATAAGGGCGTCCAGCCCG
GCACACCGTCGCAGCCAGGCTATATTTCCCGCCCCGGCGGGGAATATGCCGATTAGGCGCGACCACCCCCTTTAAAGCAGCGTTCCCATTTTTTCGAGCTTGCGAAGAAAAAATAGGCTAAACGCGCGTCTTAAAGGGGGTGGTCGCGCGTAGCGTGCGACGGTGTGCCGCCTTTGACCCTGGGGGTTTTGGCGTGGCGTCCAGCCGCGACATTACCCCCATGCGACAGGCAATAAGGGCGTCCAGCCCG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
T4SS
T4SS were predicted by using oriTfinder2.
Region 1: 77213..87138
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Locus_45 | 73747..74673 | + | 927 | CAX65497 | hypothetical protein | - |
| Locus_46 | 75187..75768 | + | 582 | CAX65498 | hypothetical protein | - |
| Locus_47 | 76905..77189 | - | 285 | CAX65499 | hypothetical protein | - |
| Locus_48 | 77213..77923 | + | 711 | CAX65500 | putative Pilx1/VirB1-like protein | virB1 |
| Locus_49 | 77923..78216 | + | 294 | CAX65501 | putative VirB2-like protein | virB2 |
| Locus_50 | 78229..80967 | + | 2739 | CAX65502 | putative Pilx3-4/VirB3-4-like protein | virb4 |
| Locus_51 | 80985..81692 | + | 708 | CAX65503 | putative Pilx5/VirB5-like protein | - |
| Locus_52 | 81700..81942 | + | 243 | CAX65504 | hypothetical protein | - |
| Locus_53 | 81946..83019 | + | 1074 | CAX65505 | putative Pilx6/VirB6-like protein | virB6 |
| Locus_54 | 83111..83248 | + | 138 | CAX65506 | hypothetical protein | - |
| Locus_55 | 83241..83924 | + | 684 | CAX65507 | putative PilX8-VirB8-like protein | virB8 |
| Locus_56 | 83921..84829 | + | 909 | CAX65508 | putative Pilx9/VirB9-like protein | virB9 |
| Locus_57 | 84873..86123 | + | 1251 | CAX65509 | putative Pilx10/VirB10-like protein | virB10 |
| Locus_58 | 86113..87138 | + | 1026 | CAX65510 | putative Pilx11/VirB11-like protein | virB11 |
| Locus_59 | 87135..87533 | + | 399 | CAX65511 | hypothetical protein | - |
| Locus_60 | 87569..87874 | + | 306 | CAX65512 | YggA-like protein | - |
| Locus_61 | 87908..88213 | + | 306 | CAX65513 | hypothetical protein | - |
| Locus_62 | 88324..88626 | + | 303 | CAX65514 | hypothetical protein | - |
| Locus_63 | 88893..90782 | + | 1890 | CAX65515 | putative MobB-like protein | - |
| Locus_64 | 90792..91538 | + | 747 | CAX65516 | MobC-like protein | - |
Host bacterium
| ID | 25 | Element type | |
| Element name | HPI-ICEEh1 | GenBank | FN297818 |
| Element size | 140338 bp | Coordinate of oriT [Strand] | 88506..88755 [+] |
| Host bacterium | Enterobacter hormaechei recombination hotspot with five | Coordinate of element | 42411..108644 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | ybtS, ybtX, ybtQ, ybtP, ybtA, irp2, irp1, ybtU, ybtT, ybtE, fyuA |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |