Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   200015
Name   oriT_ICE_R88B in_silico
Organism   Mesorhizobium sp. R88B IntA (intA) MadA (madA) MadB (madB) MadC (madC) TraD (traD) possible TraC/MobC analog TraA (traA)
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   EF157847 (_)
oriT length   40 nt
IRs (inverted repeats)      19..24, 28..33  (ACGTCG..CGACGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   _

  oriT sequence  


Download         Length: 40 nt

>oriT_ICE_R88B
GAGGGAGGGCGCGCTTATACGTCGTGCCGACGTGCGTTTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   229 GenBank   ABM65826
Name   TraA_ICE_R88B insolico UniProt ID   A2I7R8
Length   1016 a.a. PDB ID   
Note   conjugal transfer relaxase TraA

  Relaxase protein sequence


Download         Length: 1016 a.a.        Molecular weight: 112543.91 Da        Isoelectric Point: 7.0049

>ABM65826.1 TraA [Mesorhizobium sp. R88B]
MAIYHLHVKVIGRKAGSSAVASAAYRSASRLRDERIERSHDFSAKRGVVHSEVMLPERAPEAWRDRERLW
NDVEAFEVRKDAQLAREVEFALPRELSKAQGIELARDFVQVEFVSKGMVADLNVHWDRAEDGSPKPHAHV
MLTMRSVDKNGFGAKVRDWNATQLVERWRERWAELANERLAELDIDARIDHRSLEAQGISLEPQTQIGAP
AQRIEGGGLDAGEIEADRAELHREIARNNGARIIADPSVALDAITHQQSTFTRKDIAKFAHRHSDGMEQF
NEVVVAISNASDLVELGTDLRGEDRFTTRQMIQTEQRLHRATERMDLDERHAVSDAHREAALARAAQRGL
VLSGEQTDALAHITDGHGLGVVVGFAGTGKSAMLGVARQAWAAAGYEVRGAALSGIAAENLEGGSGISSR
TIASMEHSWGQARDLLTTRDVLVIDEAGMVGTRQLERVLSHAADVGAKVVLVGDPQQLQAIEAGAAFRSI
HERHGGVEIGQVRRQREVWQRDATRDLATGRIGAAINAYDAQGMVHQAATRDDARRDLVERWDRDRQAHP
EASRIILTHTNDEVRALNQAARERMRAAGDLGDEVQVTVERGPRNFASGDRVMFLRNERGLGVKNGTLGI
VEEVSKQSMTVRTDDDRSVRFELKDYAYVDHGYAATIHKAQGMTVDRTHVLATPGIDAHGSYVALSRHRD
GMDLHYGSDDFSTRERLDRSLSRDRAKDMASDYDQIDPAQSYAERRGITFRERVVEIVRRVVPEKLRDRI
GGLLDVRSPGDGEPMREGGRGPERENVGAQIGDARPMLVGENLAAGVSRETDTPVDAEAALRSARTKALV
RHARALDAVLSTGNADGQGSPDQMRELRDARSAFEKVRSYRWRDAEAAYMKNPELVREAGAGRVSRIVLA
LQLETEIRTRMDIDPGRRADRFVERWQKLDRTGRQQYQAGDISGYKSARSAMSDMAKSLERDPQLESLLA
NHKKALGIHVESGRRLGVELAFNHGIGLGRGKGIGI

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(18-215)

AAA domain (AAA_30)

(352-538)


  Protein structure


Source ID Structure
AlphaFold DB A2I7R8


Host bacterium

ID   20 Element type   
Element name   ICE_R88B GenBank   EF157847
Element size   37949 bp Coordinate of oriT [Strand]   
Host bacterium   Mesorhizobium sp. R88B IntA (intA) MadA (madA) MadB (madB) MadC (madC) TraD (traD) possible TraC/MobC analog TraA (traA)

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -