Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 122591 |
| Name | oriT1_pPYO_TB  |
| Organism | Pseudomonas aeruginosa strain JM03 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_WTXR01000205 ( 4988..5019 [+], 32 nt) |
| oriT length | 32 nt |
| IRs (inverted repeats) | 4..9, 13..18 (GCAAAC..GTTTGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 32 nt
>oriT1_pPYO_TB
CACGCAAACGAAGTTTGCATAAGTGCGCCCTT
CACGCAAACGAAGTTTGCATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 14254 | GenBank | WP_161974360 |
| Name | mobQ_GOY11_RS32235_pPYO_TB |
UniProt ID | _ |
| Length | 673 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 673 a.a. Molecular weight: 75423.14 Da Isoelectric Point: 7.0515
>WP_161974360.1 MobQ family relaxase [Pseudomonas aeruginosa]
MAIYSASVKTISRSGGRSATAAAAYRAGEQIHDERTGQTFDYRRRGGVVGVAMVLPEGVAAMSTAELWNL
AEGAEKRKNATVARELLVALPHELDTAQRQALAEAIAGDLVQRYQVGAQVAVHQPDAEGDNRNHHAHILF
TTRRLGPDGLGEKTRELDDLKRGPEEVQWIRAMVEGRTNAALEAAGHSERVDRRSLADQHAAALEAGDQV
AAMATDRAPTIHDGPAITAARREAERRGEPAPDLDKLTRSDLRRDQRELAQVSAQIYEWEVMAERRAQAE
QARRLVPDPAPAPAQIHDLAEEREQRGLPAVEQPAPAKRENEAQRVERLLAEATAAKRQWDDLVRERQAI
QQRQDKGQPGYVAAVIELGHKRLDAVAKLEAAKGDQARAEQRMAARPSPLTDWATKLGHRLTVAQARREA
KRADQAFKGHPDYQRAVTWNTRNKADQARLARPAGRDAPQIDLEISEARARSEAAQRVADRAAADPRELL
RQMDAALLDRKNALAELPRDALAEHQLAHDRQTVRELRQQIDHPDRPPAEALAEILERHQMQARHWQGVA
EGVTRERTRRVLQERQRAQQALREAVEREQGIEDAQGYELARIEREAQRIEQLLADVDGFDKGKPKPLPA
LAEERQRLDQDRRRLEEVPSWAEEARAEAEQAQQHRPSPFRPW
MAIYSASVKTISRSGGRSATAAAAYRAGEQIHDERTGQTFDYRRRGGVVGVAMVLPEGVAAMSTAELWNL
AEGAEKRKNATVARELLVALPHELDTAQRQALAEAIAGDLVQRYQVGAQVAVHQPDAEGDNRNHHAHILF
TTRRLGPDGLGEKTRELDDLKRGPEEVQWIRAMVEGRTNAALEAAGHSERVDRRSLADQHAAALEAGDQV
AAMATDRAPTIHDGPAITAARREAERRGEPAPDLDKLTRSDLRRDQRELAQVSAQIYEWEVMAERRAQAE
QARRLVPDPAPAPAQIHDLAEEREQRGLPAVEQPAPAKRENEAQRVERLLAEATAAKRQWDDLVRERQAI
QQRQDKGQPGYVAAVIELGHKRLDAVAKLEAAKGDQARAEQRMAARPSPLTDWATKLGHRLTVAQARREA
KRADQAFKGHPDYQRAVTWNTRNKADQARLARPAGRDAPQIDLEISEARARSEAAQRVADRAAADPRELL
RQMDAALLDRKNALAELPRDALAEHQLAHDRQTVRELRQQIDHPDRPPAEALAEILERHQMQARHWQGVA
EGVTRERTRRVLQERQRAQQALREAVEREQGIEDAQGYELARIEREAQRIEQLLADVDGFDKGKPKPLPA
LAEERQRLDQDRRRLEEVPSWAEEARAEAEQAQQHRPSPFRPW
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 23017 | GenBank | NZ_WTXR01000205 |
| Plasmid name | pPYO_TB | Incompatibility group | - |
| Plasmid size | 5066 bp | Coordinate of oriT [Strand] | 49..80 [+]; 4988..5019 [+] |
| Host baterium | Pseudomonas aeruginosa strain JM03 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |