Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   122590
Name   oriT_pDE7 in_silico
Organism   Sphingobium baderi strain DE-13
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP013271 (5262..5294 [-], 33 nt)
oriT length   33 nt
IRs (inverted repeats)      4..9, 14..19  (GCAAAC..GTTTGC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 33 nt

>oriT_pDE7
CACGCAAACGCAAGTTTGCATAAGTGCGCCCTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14253 GenBank   WP_030092972
Name   mobQ_ATN00_RS22535_pDE7 insolico UniProt ID   A0A0U1DYJ3
Length   403 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 403 a.a.        Molecular weight: 45183.09 Da        Isoelectric Point: 7.8634

>WP_030092972.1 MULTISPECIES: MobQ family relaxase [Bacteria]
MASFHLAVKTIGRSAGRSATAAAAYRAGVEITDERTGLVHDYTRKQGVEHSALVVPADAPAWANDRAALW
NAAEQAETRKNSTVAREYEIALPAELSAEARRELALDLAREISERHGVAVDVAIHAPGREGDQRNHHAHL
LTTTRRIGPEGLGEKTRELDQKTSGEVERWRGRWAEMQNAALERANVPERVDHRSHQRQGIEQEATVHMG
PSATAMERRAEHQAMREGRAYEPVTMVGQHNAGVIERRGLRQYIERGTEWLRDAGQRISGRLHAFAATLS
GAVDRDRRDAADAQRQEQLAAERAREQAQERQQAQEREKVAEKFRTIAGQREAGTHGYGDHNSDWKATPE
ALRKAVDAYNGANQHTKDLYIERIQREPQMARAVGQLLHERELVLQRDRGMSL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-219)


  Protein structure


Source ID Structure
AlphaFold DB A0A0U1DYJ3


Host bacterium

ID   23016 GenBank   NZ_CP013271
Plasmid name   pDE7 Incompatibility group   -
Plasmid size   6108 bp Coordinate of oriT [Strand]   5262..5294 [-]
Host baterium   Sphingobium baderi strain DE-13

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -