Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   122585
Name   oriT1_pSVR2330_3 in_silico
Organism   Enterococcus faecalis strain SVR2330
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_AP026725 (357..406 [+], 50 nt)
oriT length   50 nt
IRs (inverted repeats)     _
Location of nic site      34..35
Conserved sequence flanking the
  nic site    		  GCTTGCAAAA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 50 nt

>oriT1_pSVR2330_3
AATATCGCAACATGGTACCATGTTGCTCCGCTTGCAAAAAGAAAGCCTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14248 GenBank   WP_010717414
Name   mobV_PO855_RS16915_pSVR2330_3 insolico UniProt ID   Q9ZEH9
Length   559 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 559 a.a.        Molecular weight: 65102.51 Da        Isoelectric Point: 7.9635

>WP_010717414.1 MULTISPECIES: MobV family relaxase [Bacteria]
MSKIVARMEKMKDGNLSGIQRHNQRETNNHSNPDIDIEKSHLNYDLVNPGSINYREKIKQIIESQRISKR
AVRKDAVLVNEWIITSDTAFFQENTDTQAFFTDVVAYFSDRCGRQNVAYATVHLDETTPHMHLGIVPMYE
GRLSSKQVFSRQNLLEIQEELPTYLQERGYAIERGLRGSPQKHLSVKEYKDVQKELQVSKQELANQEQIL
AEKERELHSYEQAIFRIDRLLEEKNEEVKGKVQAMNQLETKRNEIINSLQTTVLPDLANVKEKKFSLNGL
KYVLSASDFSAIKSITKDFETLRTQNKHLKIENNNLAQKNKELTQVNHEQELQITELAYELTLKKEQLTA
FEEKQLNYDQSEQIKQELDTTTQTVSVLETENKRLKDKITDLTYDFSELNEKYQEIKLKFDGLTTYLHER
LGHAKETILFTIQQGVKYLQNAPKLKKSLERYSKDRTYLIDEKGTLFLPPDTGSKGVTMSLNPHFYPLKA
PFYNRETGCYEFVGEYMANGRSRTNTLQLSEEQVLEKKAFTFEQSTDKKAWQQSKKYSRDMSKGRGLSR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(2-191)


  Protein structure


Source ID Structure
AlphaFold DB Q9ZEH9


Host bacterium

ID   23011 GenBank   NZ_AP026725
Plasmid name   pSVR2330_3 Incompatibility group   -
Plasmid size   5143 bp Coordinate of oriT [Strand]   357..406 [+]; 4924..4958 [-]
Host baterium   Enterococcus faecalis strain SVR2330

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -